External toolbox integrations

Integrated

Two Photon

Motion correction / image alignment

• NoRMCorre GitHub | Publication
• FlowRegistration GitHub | Publication

Cell detection / auto segmentation

• EXTRACT GitHub | bioRxiv
• Suite2p (MATLAB) GitHub | bioRxiv
• CaImAn (MATLAB) GitHub | Publication

Signal extraction

In progress

Two Photon

Image Preprocessing

• DeepInterpolation GitHub | bioRxiv

Cell detection

• GRaFT GitHub | Publication

Signal decontamination / verification

• SEUDO GitHub | Publication

Wishlist

Two Photon

Motion correction

• Tracking based registration GitHub | Publication
• PatchWarp GitHub | Publication