Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

Tutorial for performing redundancy analysis

A tool for downloading HLA alleles, epitopes and frequencies

Long read structural variants in rare disease cohort

Complexity of Infection Estimation with Allele Frequencies

A python library to develop genomic data simulators

(S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.

Identification of cancer-causing variants

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

Calculate allele frequencies from a sequence multialignment.

A tool to find reads supporting/opposing structural variant breakpoints

Code for NCD1 and NCD2 statistics to detect long-term balancing selection

Scripts and data processing notes for Russian exome sequencing AF paper

A command-line parser for VCF files designed for population genetics analyses.

Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

Scripts for population genetic analyses on large number of MAGs

A Python script that generate population genotype frequency file from 1000G data

An R script for generating allele frequencies from DNA/amino acid sequence alignments.

Using gnomad-browser's GraphQL updated API to retrieve total joint allele frequencies, exome/genome allele frequencies and homozygote counts as well as population specific numbers for a batch of variants.