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Fix build #124

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merged 18 commits into from
Jul 22, 2024
Merged

Fix build #124

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591dea7
Fix build
gnodar01 Jul 11, 2024
629c61e
Bump version
gnodar01 Jul 11, 2024
8a82220
Remove lingering build_ext cmdclass
gnodar01 Jul 12, 2024
9463356
Pin scikit-image
gnodar01 Jul 12, 2024
d3faeba
Pin matplotlib
gnodar01 Jul 12, 2024
7e4102b
Remove pillow
gnodar01 Jul 12, 2024
6f0d786
Pin dowstream PyWavelets dependency
gnodar01 Jul 12, 2024
b49ec66
Upper pin on transient dependency contourpy
gnodar01 Jul 12, 2024
1a061ac
Supports python 310
gnodar01 Jul 22, 2024
a6894ed
Add workflow to build wheel
gnodar01 Jul 22, 2024
fdd1e0d
[CI debug] disable wheel build
gnodar01 Jul 22, 2024
5cdaa5a
Disable cython 3 macro
gnodar01 Jul 22, 2024
c2b1963
[CI debug] Don't install twice
gnodar01 Jul 22, 2024
c21b456
[CI debug] Enable wheel building
gnodar01 Jul 22, 2024
f516b8b
[CI debug] Constrain wheel building
gnodar01 Jul 22, 2024
1412ada
[CI debug] Matrix out across os x python
gnodar01 Jul 22, 2024
01cb69b
[fix] Remove python pins
gnodar01 Jul 22, 2024
055ff95
Finish CI
gnodar01 Jul 22, 2024
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1 change: 1 addition & 0 deletions .gitignore
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Original file line number Diff line number Diff line change
Expand Up @@ -6,6 +6,7 @@
.eggs
.idea
.tox
centrosome/_propagate.c
__pycache__
build
centrosome.egg-info/
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3 changes: 1 addition & 2 deletions centrosome/_cpmorphology2.pyx
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Expand Up @@ -12,10 +12,9 @@ cdef extern from "numpy/arrayobject.h":
cdef Py_intptr_t *dimensions
cdef Py_intptr_t *shape
cdef Py_intptr_t *strides
cdef void import_array()
cdef int PyArray_ITEMSIZE(np.ndarray)

import_array()
np.import_array()

@cython.boundscheck(False)
def skeletonize_loop(np.ndarray[dtype=np.uint8_t, ndim=2,
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3 changes: 1 addition & 2 deletions centrosome/_filter.pyx
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Expand Up @@ -10,7 +10,6 @@ cdef extern from "numpy/arrayobject.h":
ctypedef class numpy.ndarray [object PyArrayObject]:
cdef char *data
cdef Py_intptr_t *strides
cdef void import_array()
cdef int PyArray_ITEMSIZE(np.ndarray)

cdef extern from "stdlib.h":
Expand All @@ -21,7 +20,7 @@ cdef extern from "stdlib.h":
cdef extern from "string.h":
void *memset(void *, int, int)

import_array()
np.import_array()

##############################################################################
#
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3 changes: 1 addition & 2 deletions centrosome/_lapjv.pyx
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Expand Up @@ -12,11 +12,10 @@ cdef extern from "numpy/arrayobject.h":
cdef int nd
cdef Py_intptr_t *dimensions
cdef Py_intptr_t *strides
cdef void import_array()
cdef int PyArray_ITEMSIZE(np.ndarray)
cdef void * PyArray_DATA(np.ndarray)

import_array()
np.import_array()

__eps = np.sqrt(np.finfo(np.float64).eps)

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