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build(deps): bump the noodles group with 3 updates #88

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merged 4 commits into from
Feb 8, 2024

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@dependabot dependabot bot commented on behalf of github Jan 29, 2024

Updates the requirements on noodles-bgzf, noodles-core and noodles-fasta to permit the latest version.
Updates noodles-bgzf to 0.26.0

Commits
  • a185294 Bump versions for noodles 0.60.0
  • c790016 sam/lazy/record: Add wrapper for mapping quality
  • d7150f6 sam/lazy/record/cigar: Implement crate::alignment::record::Cigar for Cigar
  • f251100 sam/lazy/record/position: Implement crate::alignment::record::Position for Po...
  • 565fd62 sam/lazy/record/flags: Implement crate::alignment::record::Flags for Flags
  • bc181e1 sam/lazy/record/quality_scores: Implement crate::alignment::record::QualitySc...
  • b72f33b bam/lazy/record: Qualify types
  • 3e7a4a5 bam/lazy/record/quality_scores: Implement sam::alignment::record::QualityScor...
  • e1dee24 bam/lazy/record/read_name: Implement sam::alignment::record::ReadName for Rea...
  • 61b6f65 sam/lazy/record/sequence: Implement crate::alignment::record::Sequence for Se...
  • Additional commits viewable in compare view

Updates noodles-core to 0.14.0

Commits
  • f8a3f7d Bump versions for noodles 0.61.0
  • 0820faa sam/changelog: Update changelog
  • 99918fd bam/changelog: Format changelog
  • c227d30 sam/async/io/reader: Add record reader
  • 40cff7e sam/async/io/reader: Move record buf reader to a module
  • bb1c988 bam/async/io/reader: Move record reader to a module
  • 74630c3 bam/async/io/reader: Return an iterator over bam::Record when querying
  • 73800da bam: Update documentation
  • ede62b7 sam: Update documentation
  • 08b98ec csi/inning_index/index/reference_sequence: Fix intra-doc link
  • Additional commits viewable in compare view

Updates noodles-fasta to 0.32.0

Commits
  • f8a3f7d Bump versions for noodles 0.61.0
  • 0820faa sam/changelog: Update changelog
  • 99918fd bam/changelog: Format changelog
  • c227d30 sam/async/io/reader: Add record reader
  • 40cff7e sam/async/io/reader: Move record buf reader to a module
  • bb1c988 bam/async/io/reader: Move record reader to a module
  • 74630c3 bam/async/io/reader: Return an iterator over bam::Record when querying
  • 73800da bam: Update documentation
  • ede62b7 sam: Update documentation
  • 08b98ec csi/inning_index/index/reference_sequence: Fix intra-doc link
  • Additional commits viewable in compare view

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Updates the requirements on [noodles-bgzf](https://github.com/zaeleus/noodles), [noodles-core](https://github.com/zaeleus/noodles) and [noodles-fasta](https://github.com/zaeleus/noodles) to permit the latest version.

Updates `noodles-bgzf` to 0.26.0
- [Commits](zaeleus/noodles@noodles-bgzf-0.25.0...noodles-bgzf-0.26.0)

Updates `noodles-core` to 0.14.0
- [Commits](zaeleus/noodles@noodles-core-0.12.0...noodles-core-0.14.0)

Updates `noodles-fasta` to 0.32.0
- [Commits](zaeleus/noodles@noodles-fasta-0.30.0...noodles-fasta-0.32.0)

---
updated-dependencies:
- dependency-name: noodles-bgzf
  dependency-type: direct:production
  dependency-group: noodles
- dependency-name: noodles-core
  dependency-type: direct:production
  dependency-group: noodles
- dependency-name: noodles-fasta
  dependency-type: direct:production
  dependency-group: noodles
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Jan 29, 2024
@github-actions github-actions bot enabled auto-merge (squash) January 29, 2024 02:41
@github-actions github-actions bot merged commit fa65829 into main Feb 8, 2024
8 checks passed
@github-actions github-actions bot deleted the dependabot/cargo/noodles-c2d19e6b87 branch February 8, 2024 10:32
@holtgrewe holtgrewe restored the dependabot/cargo/noodles-c2d19e6b87 branch February 8, 2024 10:39
@holtgrewe holtgrewe deleted the dependabot/cargo/noodles-c2d19e6b87 branch February 8, 2024 10:40
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