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RFC for histogram CPU implementation #1930
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# Host Backends Support for the Histogram APIs | ||
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## Introduction | ||
In version 2022.6.0, two `histogram` APIs were added to oneDPL, but implementations were only provided for device | ||
policies with the dpcpp backend. `Histogram` was added to the oneAPI specification 1.4 provisional release and should | ||
be present in the 1.4 specification. Please see the | ||
[oneAPI Specification](https://github.com/uxlfoundation/oneAPI-spec/blob/main/source/elements/oneDPL/source/parallel_api/algorithms.rst#parallel-algorithms) | ||
for a full definition of the semantics of the histogram APIs. In short, they take elements from an input sequence and | ||
classify them into either evenly distributed or user-defined bins via a list of separating values and count the number | ||
of values in each bin, writing to a user-provided output histogram sequence. Currently, `histogram` is not supported | ||
with serial, tbb, or openmp backends in our oneDPL implementation. This RFC aims to propose the implementation of | ||
`histogram` for these host-side backends. | ||
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## Motivations | ||
Users don't always want to use device policies and accelerators to run their code. It may make more sense in many cases | ||
to use a serial implementation or a host-side parallel implementation of `histogram`. It's natural for a user to expect | ||
that oneDPL supports these other backends for all APIs. Another motivation for adding the support is simply to be spec | ||
compliant with the oneAPI specification. | ||
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There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Due to it is not a story telling, I would suggest omitting introductory expressions like "It may make more sense" or "It's natural for a user to expect"... Only short and exact information. For example, There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. taken suggestion. Thanks |
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## Design Considerations | ||
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### Key Requirements | ||
Provide support for the `histogram` APIs with the following policies and backends: | ||
- Policies: `seq`, `unseq`, `par`, `par_unseq` | ||
- Backends: `serial`, `tbb`, `openmp` | ||
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Users have a choice of execution policies when calling oneDPL APIs. They also have a number of options of backends | ||
which they can select from when using oneDPL. It is important that all combinations of these options have support for | ||
the `histogram` APIs. | ||
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### Performance | ||
As with all algorithms in oneDPL, our goal is to make them as performant as possible. By definition, `histogram` is a | ||
low computation algorithm which will likely be limited by memory bandwidth, especially for the evenly-divided case. | ||
Minimizing and optimizing memory accesses, as well as limiting unnecessary memory traffic of temporaries, will likely | ||
have a high impact on overall performance. | ||
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There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Taking into account my shared thought above, I would propose to re-prahse it keeping the main point shorter: "A histogram algorithm is a memory-bound algorithm. So, the implementation should care of reducing memory accesses and minimizing temporary memory traffic." There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Taken mostly. Thanks |
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### Memory Footprint | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. Do we wish to specify space / computational complexity of the proposed algorithm somewhere, or is this too much? There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I've added some sections on computation complexity and temporary memory requirements. I don't think we should add something like this to the specification though, because I don't want to dictate the algorithm used from the specification, but its good to document it in the current proposal. Thanks. |
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There are no guidelines here from the standard library as this is an extension API. However, we should always try to | ||
minimize memory footprint whenever possible. Minimizing memory footprint may also help us improve performance here | ||
because, as mentioned above, this will very likely be a memory bandwidth-bound API. In general, the normal case for | ||
histogram is for the number of elements in the input sequence to be far greater than the number of output histogram | ||
bins. We may be able to use that to our advantage. | ||
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### Code Reuse | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I guess we can this topic omit at all. It tells nothing about 'histogram', just general wording, which can be applied for any new feature in oneDPL... There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I've removed some of the general language and added something which is important for histogram in an attempt to answer feedback from @akukanov to clarify where the implementation of the algorithm will live. |
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Our goal here is to make something maintainable and to reuse as much as we can which already exists and has been | ||
reviewed within oneDPL. With everything else, this must be balanced with performance considerations. | ||
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### unseq Backend | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. "unseq Backend" There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I think this part is about developing (or not) an implementation for unsequenced policies. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I like the proposed name for the section better anyway for what is discussed. Thanks. |
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As mentioned above, histogram looks to be a memory bandwidth-dependent algorithm. This may limit the benefit achievable | ||
from vector instructions as they provide assistance mostly in speeding up computation. Vector operations in this case | ||
also compound our issue of race conditions, multiplying the number of concurrent lines of execution by the vector | ||
length. The advantage we get from vectorization of the increment operation or the lookup into the output histogram may | ||
not provide much benefit, especially when we account for the extra memory footprint required or synchronization | ||
required to overcome the race conditions which we add from the additional concurrent streams of execution. It may make | ||
sense to decline to add vectorized operations within histogram depending on the implementation used, and based on | ||
performance results. | ||
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### Serial Backend | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. https://github.com/oneapi-src/oneDPL/pull/1930/files#diff-fb5f6394ad0d350d719b9f31b139fa60c347ec64795c78e56875c4f002aeb0e7R25 Explanation what is "Serial Backend" means as the others backends mean, is a kind of "oneDPL general description" and not related to RFC for histogram feature, IMHO. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. With some recent changes, there is some specifics about the serial implementation I wanted to add here so I've kept the section. |
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We plan to support a serial backend for histogram APIs in addition to openMP and TBB. This backend will handle all | ||
policies types, but always provide a serial unvectorized implementation. | ||
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## Existing Patterns | ||
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There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. If we intent to give some information about OneDPL parallel backend patterns on which histogram can based on, I would notify, there is not "count_if" pattern, there is "reduce"("transform_reduce") pattern. There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. I clarified the language a little here to make it more clear that copy_if uses reduce internally. I still think it deserves some text describing it as it may not be immediately obvious to everyone that reduce is not well matched. |
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### count_if | ||
`histogram` is similar to `count_if` in that it conditionally increments a number of counters based upon the data in a | ||
sequence. `count_if` returns a scalar-typed value and doesn't provide any function to modify the variable being | ||
incremented. Using `count_if` without significant modification would require us to loop through the entire sequence for | ||
each output bin in the histogram. From a memory bandwidth perspective, this is untenable. Similarly, using a | ||
`histogram` pattern to implement `count_if` is unlikely to provide a well-performing result in the end, as contention | ||
should be far higher, and `reduce` is a very well-matched pattern performance-wise. | ||
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### parallel_for | ||
`parallel_for` is an interesting pattern in that it is very generic and embarrassingly parallel. This is close to what | ||
we need for `histogram`. However, we cannot simply use it without any added infrastructure. If we were to just use | ||
`parallel_for` alone, there would be a race condition between threads when incrementing the values in the output | ||
histogram. We should be able to use `parallel_for` as a building block for our implementation, but it requires some way | ||
to synchronize and accumulate between threads. | ||
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## Proposal | ||
I believe there are two competing options for `histogram`, which may both have utility in the final implementation | ||
depending on the use case. | ||
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### Implementation One (Embarrassingly Parallel) | ||
This method uses temporary storage and a pair of embarrassingly parallel `parallel_for` loops to accomplish the | ||
`histogram`. | ||
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#### OpenMP: | ||
1) Determine the number of threads that we will use locally | ||
2) Create temporary data for the number of threads minus one copy of the histogram output sequence. Thread zero can | ||
use the user-provided output data. | ||
3) Run a `parallel_for` pattern which performs a `histogram` on the input sequence where each thread accumulates into | ||
its own copy of the output sequence using the temporary storage to remove any race conditions. | ||
4) Run a second `parallel_for` over the `histogram` output sequence which accumulates all temporary copies of the | ||
histogram into the output histogram sequence. This step is also embarrassingly parallel. | ||
5) Deallocate temporary storage. | ||
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#### TBB | ||
For TBB, we can do something similar, but we can use `enumerable_thread_specific` and its member function, `local()` to | ||
provide a lazy allocation of thread local management, which does not require querying the number of threads or getting | ||
the index. This allows us to operate in a compose-able manner while keeping the same conceptual implementation. | ||
1) Embarassingly parallel accumulation to thread local storage | ||
2) Embarassingly parallel aggregate to output data | ||
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I believe the challenge here may be to properly provide the heuristics to choose between this implementation and the | ||
other implementation. However, we should be able to have some reasonable division. | ||
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### Implementation Two (Atomics) | ||
This method uses atomic operations to remove the race conditions during accumulation. With atomic increments of the | ||
output histogram data, we can merely run a `parallel_for` pattern. | ||
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To deal with atomics appropriately, we have some limitations. We must either use standard library atomics, atomics | ||
specific to a backend, or custom atomics specific to a compiler. `C++17` provides `std::atomic<T>`, however, this can | ||
only provide atomicity for data which is created with atomics in mind. This means allocating temporary data and then | ||
copying it to the output data. `C++20` provides `std::atomic_ref<T>` which would allow us to wrap user-provided output | ||
data in an atomic wrapper, but we cannot assume `C++17` for all users. OpenMP provides atomic | ||
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operations, but that is only available for the OpenMP backend. The working plan is to implement a macro like | ||
`_ONEDPL_ATOMIC_INCREMENT(var)` which uses an `std::atomic_ref` if available , and alternatively uses compiler builtins | ||
like `InterlockedAdd` or `__atomic_fetch_add_n`. It needs to be investigated if we need to have any version which | ||
needs to turn off the atomic implementation, due to lack of support by the compiler (I think this is unlikely). | ||
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It remains to be seen if atomics are worth their overhead and contention from a performance perspective and may depend | ||
on the different approaches available. | ||
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### Selecting Between Algorithms | ||
It may be the case that multiple aspects may provide an advantage to either algorithm one or two. Which `histogram` API | ||
has been called, `n`, the number of output bins, and backend/atomic provider may all impact the performance trade-offs | ||
between these two approaches. My intention is to experiment with these and be open to a heuristic to choose one or the | ||
other based upon the circumstances if that is what the data suggests is best. The larger the number of output bins, the | ||
better atomics should do vs redundant copies of the output. | ||
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## Alternative Approaches | ||
* One could consider some sort of locking approach which locks mutexes for subsections of the output histogram prior to | ||
There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. BTW, I have a curiosity question. Which approach does NVidia use? There was a problem hiding this comment. Choose a reason for hiding this commentThe reason will be displayed to describe this comment to others. Learn more. NVidia has a similar API within CUB but not within Thrust, and therefore does not have a CPU implementation that I am aware of, only one specifically for a GPU device. |
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modifying them. It's possible such an approach could provide a similar approach to atomics, but with different | ||
overhead tradeoffs. It seems quite likely that this would result in more overhead, but it could be worth exploring. | ||
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* Another possible approach could be to do something like the proposed implementation one, but with some sparse | ||
representation of output data. However, I think the general assumptions we can make about the normal case make this | ||
less likely to be beneficial. It is quite likely that `n` is much larger than the output histograms, and that a large | ||
percentage of the output histogram may be occupied, even when considering dividing the input amongst multiple | ||
threads. This could be explored if we find temporary storage is too large for some cases and the atomic approach | ||
does not provide a good fallback. | ||
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## Open Questions | ||
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* What is the overhead of atomics in general in this case and does the overhead there make them inherently worse than | ||
merely having extra copies of the histogram and accumulating? | ||
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* Is it worthwhile to have separate implementations for TBB and OpenMP because they may differ in the best-performing | ||
implementation? What is the best heuristic for selecting between algorithms (if one is not the clear winner)? | ||
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* How will vectorized bricks perform, and in what situations will it be advantageous to use or not use vector | ||
instructions? |
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let me share my thoughts:
In my understanding RFC is not a book... So, I would preferer to have a short, concise and precise description of what is offered, without frills, like a mathematical theorem. For example:
"The oneDPL library added histogram APIs, currently implemented only for device policies with the DPC++ backend. These APIs are defined in the oneAPI Specification 1.4. Please see the
oneAPI Specification for the details. The host-side backends (serial, TBB, OpenMP) are not yet supported. This RFC proposes extending histogram support to these backends."
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Yes, I've accepted your language here. Thanks.