-
Notifications
You must be signed in to change notification settings - Fork 116
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
UseGalaxy.EU Jenkins Bot
committed
Dec 8, 2024
1 parent
05179df
commit 8b6cb34
Showing
1 changed file
with
112 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,112 @@ | ||
| --- | ||
| site: freiburg | ||
| tags: [tools] | ||
| title: UseGalaxy.eu Tool Updates for 2024-12-08 | ||
| supporters: | ||
| - denbi | ||
| - elixir | ||
| --- | ||
|
|
||
| On 2024-12-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #490](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#490/) | ||
|
|
||
|
|
||
| ## Climate Analysis | ||
|
|
||
| - harmonize_insitu_to_netcdf was updated to [15260949227d](https://toolshed.g2.bx.psu.edu/view/ecology/harmonize_insitu_to_netcdf/15260949227d) | ||
|
|
||
| ## QIIME 2 | ||
|
|
||
| - qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2) | ||
| - qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623) | ||
|
|
||
| ## Mapping | ||
|
|
||
| - rgrnastar was updated to [53255f6eecfc](https://toolshed.g2.bx.psu.edu/view/iuc/rgrnastar/53255f6eecfc) | ||
| - rna_starsolo was updated to [381a32c51141](https://toolshed.g2.bx.psu.edu/view/iuc/rna_starsolo/381a32c51141) | ||
|
|
||
| ## Convert Formats | ||
|
|
||
| - msconvert was updated to [ab6c14374bc0](https://toolshed.g2.bx.psu.edu/view/galaxyp/msconvert/ab6c14374bc0) | ||
|
|
||
| ## Assembly | ||
|
|
||
| - flye was updated to [cd11366d92cf](https://toolshed.g2.bx.psu.edu/view/bgruening/flye/cd11366d92cf) | ||
| - fastk_fastk was updated to [8049cb5537b7](https://toolshed.g2.bx.psu.edu/view/iuc/fastk_fastk/8049cb5537b7) | ||
|
|
||
| ## Machine Learning | ||
|
|
||
| - black_forest_labs_flux was updated to [7939ae8c5fd5](https://toolshed.g2.bx.psu.edu/view/bgruening/black_forest_labs_flux/7939ae8c5fd5) | ||
|
|
||
| ## Evolution | ||
|
|
||
| - quicktree was updated to [1e89a460d1bd](https://toolshed.g2.bx.psu.edu/view/iuc/quicktree/1e89a460d1bd) | ||
|
|
||
| ## Genome Diversity | ||
|
|
||
| - fasttree was updated to [ef46a404db96](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/ef46a404db96) | ||
|
|
||
| ## HiCExplorer | ||
|
|
||
| - hicexplorer_chicaggregatestatistic was updated to [c3ffb2c1e314](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicaggregatestatistic/c3ffb2c1e314) | ||
| - hicexplorer_chicdifferentialtest was updated to [45828071edc3](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicdifferentialtest/45828071edc3) | ||
| - hicexplorer_chicexportdata was updated to [1a31e75e979e](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicexportdata/1a31e75e979e) | ||
| - hicexplorer_chicplotviewpoint was updated to [920526260066](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicplotviewpoint/920526260066) | ||
| - hicexplorer_chicqualitycontrol was updated to [f6a169b5e43b](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicqualitycontrol/f6a169b5e43b) | ||
| - hicexplorer_chicsignificantinteractions was updated to [ff1af7bac1cb](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicsignificantinteractions/ff1af7bac1cb) | ||
| - hicexplorer_chicviewpoint was updated to [37125838e360](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpoint/37125838e360) | ||
| - hicexplorer_chicviewpointbackgroundmodel was updated to [6f8debcf2ac9](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_chicviewpointbackgroundmodel/6f8debcf2ac9) | ||
| - hicexplorer_hicadjustmatrix was updated to [e8760fc0e29b](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicadjustmatrix/e8760fc0e29b) | ||
| - hicexplorer_hicaggregatecontacts was updated to [30677e95bc89](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaggregatecontacts/30677e95bc89) | ||
| - hicexplorer_hicaverageregions was updated to [3240e8a7c54f](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicaverageregions/3240e8a7c54f) | ||
| - hicexplorer_hicbuildmatrix was updated to [d9967770de96](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicbuildmatrix/d9967770de96) | ||
| - hicexplorer_hiccomparematrices was updated to [5dd1aae12f03](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccomparematrices/5dd1aae12f03) | ||
| - hicexplorer_hiccompartmentspolarization was updated to [87eb9c58cd19](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccompartmentspolarization/87eb9c58cd19) | ||
| - hicexplorer_hicconvertformat was updated to [574f295b5ba4](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicconvertformat/574f295b5ba4) | ||
| - hicexplorer_hiccorrectmatrix was updated to [937b7b9832d0](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrectmatrix/937b7b9832d0) | ||
| - hicexplorer_hiccorrelate was updated to [0f5786ffa10d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hiccorrelate/0f5786ffa10d) | ||
| - hicexplorer_hicdetectloops was updated to [4375e25de06a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdetectloops/4375e25de06a) | ||
| - hicexplorer_hicdifferentialtad was updated to [4977f65da0ff](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicdifferentialtad/4977f65da0ff) | ||
| - hicexplorer_hicfindrestrictionsites was updated to [f0b1bd38745a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicfindrestrictionsites/f0b1bd38745a) | ||
| - hicexplorer_hicfindtads was updated to [478aacfbaa37](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicfindtads/478aacfbaa37) | ||
| - hicexplorer_hichyperoptdetectloops was updated to [3e5c86c2f80d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hichyperoptdetectloops/3e5c86c2f80d) | ||
| - hicexplorer_hicinfo was updated to [7fbd6feba1ca](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinfo/7fbd6feba1ca) | ||
| - hicexplorer_hicinterintratad was updated to [908fa330b93b](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicinterintratad/908fa330b93b) | ||
| - hicexplorer_hicmergedomains was updated to [febfddb0b3e8](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergedomains/febfddb0b3e8) | ||
| - hicexplorer_hicmergeloops was updated to [1d9799f4b854](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergeloops/1d9799f4b854) | ||
| - hicexplorer_hicmergematrixbins was updated to [9d93c8fbe0a6](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicmergematrixbins/9d93c8fbe0a6) | ||
| - hicexplorer_hicnormalize was updated to [5e83c077e31d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicnormalize/5e83c077e31d) | ||
| - hicexplorer_hicpca was updated to [f86ca478c6af](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicpca/f86ca478c6af) | ||
| - hicexplorer_hicplotaverageregions was updated to [3f1b286a5c34](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotaverageregions/3f1b286a5c34) | ||
| - hicexplorer_hicplotdistvscounts was updated to [89cfe7de541b](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotdistvscounts/89cfe7de541b) | ||
| - hicexplorer_hicplotmatrix was updated to [025a128652dc](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotmatrix/025a128652dc) | ||
| - hicexplorer_hicplotsvl was updated to [1602cc5b673c](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotsvl/1602cc5b673c) | ||
| - hicexplorer_hicplotviewpoint was updated to [a10fce08c2dc](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicplotviewpoint/a10fce08c2dc) | ||
| - hicexplorer_hicquickqc was updated to [b13e7a200525](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicquickqc/b13e7a200525) | ||
| - hicexplorer_hicsummatrices was updated to [d74cf4a61d65](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicsummatrices/d74cf4a61d65) | ||
| - hicexplorer_hictransform was updated to [df64cc4dfb4d](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hictransform/df64cc4dfb4d) | ||
| - hicexplorer_hicvalidatelocations was updated to [d890828ab02a](https://toolshed.g2.bx.psu.edu/view/bgruening/hicexplorer_hicvalidatelocations/d890828ab02a) | ||
|
|
||
| ## Metagenomic Analysis | ||
|
|
||
| - concoct_merge_cut_up_clustering was updated to [713189575b8b](https://toolshed.g2.bx.psu.edu/view/iuc/concoct_merge_cut_up_clustering/713189575b8b) | ||
| - dada2_assigntaxonomyaddspecies was updated to [3a89c3f99f3d](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_assigntaxonomyaddspecies/3a89c3f99f3d) | ||
| - dada2_primercheck was updated to [74ec28dbdf17](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_primercheck/74ec28dbdf17) | ||
| - dada2_removebimeradenovo was updated to [1770d188f72d](https://toolshed.g2.bx.psu.edu/view/iuc/dada2_removebimeradenovo/1770d188f72d) | ||
| - phyloseq_from_biom was updated to [1feea247d08a](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_biom/1feea247d08a) | ||
| - phyloseq_from_dada2 was updated to [40ebae5bbe51](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_from_dada2/40ebae5bbe51) | ||
| - phyloseq_plot_ordination was updated to [c35e0075c7a2](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_ordination/c35e0075c7a2) | ||
| - phyloseq_plot_richness was updated to [1a6c2cc92c6e](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_richness/1a6c2cc92c6e) | ||
|
|
||
| ## Variant Calling | ||
|
|
||
| - ucsc_fatovcf was updated to [a40dd4fd3096](https://toolshed.g2.bx.psu.edu/view/iuc/ucsc_fatovcf/a40dd4fd3096) | ||
|
|
||
| ## None | ||
|
|
||
| - data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78) | ||
| - data_manager_mapseq was updated to [19ef193d1316](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_mapseq/19ef193d1316) | ||
|
|
||
| ## hca_sc_scanpy_tools | ||
|
|
||
| - scanpy_find_variable_genes was updated to [d88a29e2eba6](https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_variable_genes/d88a29e2eba6) | ||
|
|