Autoupdate tool blog post

_posts/2024-12-22-tool-update.md

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+---
+site: freiburg
+tags: [tools]
+title: UseGalaxy.eu Tool Updates for 2024-12-22
+supporters:
+- denbi
+- elixir
+---
+
+On 2024-12-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in [Jenkins Build #492](https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#492/)
+
+
+## Annotation
+
+- augustus was updated to [0fc0f9cf035a](https://toolshed.g2.bx.psu.edu/view/bgruening/augustus/0fc0f9cf035a)
+- augustus_training was updated to [aada0deea587](https://toolshed.g2.bx.psu.edu/view/bgruening/augustus_training/aada0deea587)
+- glimmer_build_icm was updated to [e903e26c014d](https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_build_icm/e903e26c014d)
+- glimmer_knowledge_based was updated to [21d0af260f11](https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_knowledge_based/21d0af260f11)
+- glimmer_not_knowledge_based was updated to [75cedbd8cf1b](https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_not_knowledge_based/75cedbd8cf1b)
+- tetyper was updated to [2b21643ce8d7](https://toolshed.g2.bx.psu.edu/view/iuc/tetyper/2b21643ce8d7)
+- ectyper was updated to [daba54cd25ca](https://toolshed.g2.bx.psu.edu/view/nml/ectyper/daba54cd25ca)
+- sistr_cmd was updated to [cf767360ede1](https://toolshed.g2.bx.psu.edu/view/nml/sistr_cmd/cf767360ede1)
+
+## Compute indicators for turnover boulders fields
+
+- cb_dissim was updated to [ffaa9a71b2d2](https://toolshed.g2.bx.psu.edu/view/ecology/cb_dissim/ffaa9a71b2d2)
+
+## Metagenomic Analysis
+
+- phyloseq_plot_bar was updated to [ad81e112f4d9](https://toolshed.g2.bx.psu.edu/view/iuc/phyloseq_plot_bar/ad81e112f4d9)
+- staramr was updated to [3548a93b39c1](https://toolshed.g2.bx.psu.edu/view/nml/staramr/3548a93b39c1)
+- checkv_build_database was updated to [7e80c69020f7](https://toolshed.g2.bx.psu.edu/view/ufz/checkv_build_database/7e80c69020f7)
+
+## Data Managers
+
+- genomad_build_database was updated to [75abfb03b635](https://toolshed.g2.bx.psu.edu/view/ufz/genomad_build_database/75abfb03b635)
+- vibrant_build_database was updated to [e0faddfd9cf9](https://toolshed.g2.bx.psu.edu/view/ufz/vibrant_build_database/e0faddfd9cf9)
+- virsorter_build_database was updated to [c456ae8354f2](https://toolshed.g2.bx.psu.edu/view/ufz/virsorter_build_database/c456ae8354f2)
+
+## QIIME 2
+
+- qiime2__deblur__denoise_16S was updated to [2572fc0f88f2](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2)
+- qiime2__deblur__denoise_16S was updated to [b883cbea5623](https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/b883cbea5623)
+
+## Convert Formats
+
+- glimmer_glimmer_to_gff was updated to [3d71ab1562d7](https://toolshed.g2.bx.psu.edu/view/bgruening/glimmer_glimmer_to_gff/3d71ab1562d7)
+
+## Graph/Display Data
+
+- jbrowse2 was updated to [21bb464c1d53](https://toolshed.g2.bx.psu.edu/view/fubar/jbrowse2/21bb464c1d53)
+
+## Metabolomics
+
+- xcms_xcmsset was updated to [3bd53dcfa438](https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_xcmsset/3bd53dcfa438)
+
+## Genome Diversity
+
+- fasttree was updated to [bc939965ce41](https://toolshed.g2.bx.psu.edu/view/iuc/fasttree/bc939965ce41)
+
+## Variant Calling
+
+- bcftools_csq was updated to [33df4e68959b](https://toolshed.g2.bx.psu.edu/view/iuc/bcftools_csq/33df4e68959b)
+
+## None
+
+- data_manager_diamond_database_builder was updated to [4a08b7b76b78](https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78)
+