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riboseq.usegalaxy.eu #1236

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riboseq.usegalaxy.eu #1236

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0d1afd4
Create riboseq.yml
codemeleon Jun 17, 2024
cc706c0
Initial configurations for riboseq
codemeleon Jun 17, 2024
1139775
correction
codemeleon Jun 17, 2024
4d8145f
removed quoting changes
codemeleon Jun 18, 2024
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1 change: 1 addition & 0 deletions files/galaxy/subdomains/riboseq/themes/riboseq.yml
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@@ -0,0 +1 @@

2 changes: 1 addition & 1 deletion group_vars/gxconfig.yml
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Expand Up @@ -1029,7 +1029,7 @@ base_app_main: &BASE_APP_MAIN
'cancer.usegalaxy.eu': Cancer
'aqua.usegalaxy.eu': Aqua
'eirene.usegalaxy.eu': EIRENE

'riboseq.usegalaxy.eu': RiboSeq

# This option has been deprecated, use the `logo_src` instead to
# change the default logo including the galaxy brand title.
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7 changes: 3 additions & 4 deletions group_vars/sn06.yml
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Expand Up @@ -298,7 +298,6 @@ galaxy_virtualenv_command: "{{ conda_prefix }}/envs/_galaxy_/bin/python -m venv
galaxy_nonrepro_tools: "{{ galaxy_root }}/custom-tools"
galaxy_nonrepro_commit: master


# Custom override
# Our galaxy_tool_dependency_dir is on NFS, and permissions are set in such a
# way that they cannot be changed by the ansible connected user.
Expand Down Expand Up @@ -373,7 +372,7 @@ galaxy_themes_subdomains:
- name: cancer
- name: aqua
- name: eirene

- name: riboseq

galaxy_config_file_src_dir: files/galaxy
galaxy_config_files:
Expand Down Expand Up @@ -465,5 +464,5 @@ galaxy_config_templates:
dest: "{{ galaxy_config['galaxy']['object_store_config_file'] }}"
- src: "{{ galaxy_config_file_src_dir }}/tpv/destinations.yml.j2"
dest: "{{ tpv_mutable_dir }}/destinations.yml"
- src: '{{ galaxy_config_template_src_dir }}/config/vault_conf.yml.j2'
dest: '{{ galaxy_config_dir }}/vault_conf.yml'
- src: "{{ galaxy_config_template_src_dir }}/config/vault_conf.yml.j2"
dest: "{{ galaxy_config_dir }}/vault_conf.yml"
3 changes: 2 additions & 1 deletion templates/galaxy/config/global_host_filters.py.j2
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Expand Up @@ -144,7 +144,8 @@ DOMAIN_SECTIONS = {
"earth-system-section-interactivetools",
"biodiversity_data_exploration"
],
'eirene': ['chemicaltoolbox','metabolomics','interactivetools']
'eirene': ['chemicaltoolbox','metabolomics','interactivetools'],
'riboseq': ['transcriptomics','rna_seq','ribo_seq','rna_analysis', 'gene_regulation','interactivetools']
}


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