Sparse Gaussian Process Potentials
Jupyter Notebook showing how to plot FES, histograms and time-series data using Matplotlib.
Prediction of transition time (kinetics) associated with aromatic ring flipping using infrequent metadynamics
Open-sourced. A cloud-based workflow to evaluate the confidence of a given docked pose with binding pose metadynamics
This repo provides all details to repertory and validate the paper Flap dynamics in pepsin-like aspartic proteases: a computational perspective using Plasmepsin-II and BACE-1 as model systems (doi: https://doi.org/10.1101/2020.04.27.062539)
symbolic collective variable definitions and automation of metadynamics
Input files for self-rbfe
This repository contains data and input files for the manuscript entitled "An integrative characterisation of proline cis and trans conformers in a disordered peptide' by Pettitt et al. DOI: 10.1016/j.bpj.2024.09.028
Add a description, image, and links to the metadynamics-simulations topic page so that developers can more easily learn about it.
To associate your repository with the metadynamics-simulations topic, visit your repo's landing page and select "manage topics."