Python implementation of Striped Smith-Waterman Algorithm
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Mar 4, 2024 - C
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local-alignment
Here are 22 public repositories matching this topic...
Needleman-Wunsch Algorithm for global alignment and local alignment
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Feb 12, 2020 - Python
A Python module to calculate alignment between two sequences using EMBOSS' needle, stretcher, and water
smith-waterman needleman-wunsch needle water global-alignment sequence-alignment emboss protein-sequence pairwise-alignment local-alignment nucleotide-sequence
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Oct 30, 2024 - Python
Rapid local alignment search by in silico PCR
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Jan 11, 2024 - Groovy
Pairwise Sequence Aligment Tool (PSAT) a simple application to align sequences.
proteins smith-waterman amino-acids global-alignment sequence-alignment pairwise needleman-wunsch-algorithm local-alignment smith-waterman-alignment needleman-wunsh
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Mar 4, 2019 - HTML
Global and Local Sequence Alignment
bioinformatics smith-waterman needleman-wunsch global-alignment needleman-wunsch-algorithm local-alignment smith-waterman-alignment
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Nov 30, 2020 - Python
Sequence alignment methods implementation
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Nov 10, 2017 - Java
A compilation of all the programs in my bioinformatics course
bioinformatics pattern-matching udemy global-alignment sequence-alignment de-novo-assembly needleman-wunsch-algorithm semiglobal local-alignment udemy-course smith-waterman-algorithm semiglobalmatching free-shift-alignment mapping-assembly
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Jan 12, 2023 - Python
transposon insertion site identified from raw fastq file and transposon sequences, using local alignment for identification.
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Jul 4, 2022
An R script that calculates a similarity matrix for a list of protein sequences with the aid of Bleakley-Yamanishi Normalized Smith-Waterman Similarity Score.
r psa computational-biology smith-waterman protein drug-discovery protein-sequences fasta sequence similarity-score sequence-alignment similarity-matrix dti fasta-sequences pairwise-alignment local-alignment smith-waterman-alignment computer-aided-drug-design biostrings dti-prediction
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Dec 23, 2021 - R
Local and Global Alignment API
django bioinformatics django-rest-framework drf alignment global-alignment django-project local-alignment bioinformatics-services
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Jan 3, 2023 - Python
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Sep 4, 2024 - Python
Fuzzy finder using Smith-Waterman algorithm
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Mar 29, 2024 - Go
MSc Biology C++ Course Assignment. A program that can either perform a global, or local sequence alignment. Implementation of the Smith-Waterman and Needleman-Wunsch algorithms.
smith-waterman needleman-wunsch global-alignment sequence-alignment needleman-wunsch-algorithm local-alignment smith-waterman-alignment smith-waterman-algorithm needleman-wunsch-alignment
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Jan 31, 2023 - C++
Rapid and sensitive local alignment of genomic sequences employing motif anchors
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Nov 12, 2018 - C
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Nov 30, 2017 - Python
Algoritmos para el alineamiento de secuencias de ADN
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Aug 26, 2020 - Python
Implementation of the FASTA algorithm from bioinformatics
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Apr 4, 2017 - Haskell
I developed a R package implementing the Smith-Waterman algorithm. The package building, check and installation works smoothly with 0 error (see log_file). BiocCheck results show 1 error because I’m not registered at the support site, 1 warning because BiocViews terms are invalid. Check the log_file for more details.
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Mar 27, 2023 - HTML
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