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Release 2.3
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@popaula937 popaula937 released this 25 Jun 08:10
· 1827 commits to master since this release
2.3
e39275c

Released packages:

  • On Pypi
    • tvb-library
    • tvb-framework
    • tvb-storage
    • tvb-rest-client
    • tvb-contrib

tvb-framework

  • optimizations related to: simulation run flow, Operations and Data structure page load
  • start support for BIDS data: new button on Data structure page to import the Brain Tumor dataset from EBRAINS
  • improve mechanism to cancel/delete PSE operations
  • separate code related to storage into a new package called tvb-storage
  • bug fixing

tvb-storage

  • first version of the tvb-storage released as a separate package

tvb-rest-client

  • adjustments to new architecture

tvb-contrib

  • correct models and adjust their code to neotraits API

Involved Jira tasks in 2.3

Sub-task

* [TVB-2907] - Study BIDS specification
* [TVB-2911] - Implement a BIDS importer for Tumor dataset
* [TVB-2912] - Analyze API to download data from EBRAINS
* [TVB-2942] - Review description for importers/exporters

Bug

* [TVB-2356] - Update Tutorial 0 on docs site
* [TVB-2836] - Fix 'edit simulation' popup window in the simulator page
* [TVB-2846] - SQLAlchemy raises exceptions during framework tests
* [TVB-2867] - Models under tvb_contrib are not working
* [TVB-2935] - Jupyter fails to start from linux distribution
* [TVB-2943] - Cannot delete PSE simulations
* [TVB-2944] - miss dependence : package requests

Task

* [TVB-2528] - Optimize run_simulation in version 2.*
* [TVB-2868] - Update license text
* [TVB-2900] - TVB-BIDS compatibility
* [TVB-2909] - Fix wrongly loaded Simulator fragments when clicking Back
* [TVB-2913] - Separate the storage handling in a different module  
* [TVB-2915] - Project planning and discussions VBC
* [TVB-2936] - Remove portlets module
* [TVB-2937] - Optimize Data Structure page
* [TVB-2938] - Prepare release 2.3
* [TVB-2939] - Testing before release 2.3

Improvement

* [TVB-2883] - Branch button should be active only if simulation is finished
* [TVB-2908] - Ensure all operations of PSE are cancelled
* [TVB-2923] - Optimise operations page

Citation

When using TVB 2.2 or higher, for scientific publications, please cite it as follows:

Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide, Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013)
The Virtual Brain: a simulator of primate brain network dynamics. Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010)

Schirner M, Domide L, Perdikis D, Triebkorn P, Stefanovski L, Pai R, Prodan P, Valean B, Palmer J, Langford C, Blickensdörfer A,
van der Vlag M, Diaz-Pier S, Peyser A, Woodman M, Zehl L, Fousek J, Petkoski S, Kusch L, Hashemi M, Marinazzo D, Mangin JF, Flöel A,
Akintoye S, Stahl C, Deco G, McIntosh, Hilgetag C, Morgan M, Schuller B, Upton A, McMurtrie C, Dickscheid T, Bjaalie J, Amunts K,
Mersmann J, Jirsa V, Ritter P. https://arxiv.org/abs/2102.05888
Brain simulation as a Service: The Virtual Brain on the European Research Platform EBRAINS.

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