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try to fix formatting error
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smcclatchy committed Dec 9, 2024
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3 changes: 2 additions & 1 deletion episodes/create-transcriptome-map.Rmd
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Expand Up @@ -93,7 +93,8 @@ of this workshop. The required column names are:
First, we will get the gene positions from the annotation and rename the
columns to match what `ggtmap` requires. We need to have columns named
`gene_id`, `gene_chr`, and `gene_pos`. We must rename the columns because, when
we are finished, we will have `chr` and `pos` columns for both the gene and its QTL. We will also add the `symbol` column since it is nice to have gene symbols
we are finished, we will have `chr` and `pos` columns for both the gene and its
QTL. We will also add the `symbol` column since it is nice to have gene symbols
in the data.

```{r get_gene_pos}
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7 changes: 3 additions & 4 deletions episodes/interpret-results.Rmd
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Expand Up @@ -19,9 +19,11 @@ variation from qtl2 mapping results.


![Attie et al, 2018 Supplementary Figure S7](fig/SFig7_Keller_2018_chr11.png){alt="Keller et al, figure S7"}


::::::::::::::::::::::::::::::::::::: challenge

## Challenge: Interpreting qtl2 results
#### Challenge: Interpreting qtl2 results

Refer to the figure above.

Expand All @@ -45,8 +47,5 @@ together?
::::::::::::::::::::::::::::::::::::: keypoints

- Use `.md` files for episodes when you want static content
- Use `.Rmd` files for episodes when you need to generate output
- Run `sandpaper::check_lesson()` to identify any issues with your lesson
- Run `sandpaper::build_lesson()` to preview your lesson locally

::::::::::::::::::::::::::::::::::::::::::::::::

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