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DPL-823 Import PBMC pool plates into Sequencescape (simple version) #4039

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DPL-823 Import PBMC pool plates into Sequencescape (simple version) #4039

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69d341e
Create simple manifest for importing pool plates for scRNA Core pipeline
KatyTaylor Feb 27, 2024
200cc46
Add LRC PBMC Pools Input purpose to record loader
KatyTaylor Mar 1, 2024
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10 changes: 9 additions & 1 deletion config/default_records/plate_purposes/011_scrna_core_cdna_prep_plate_purposes.wip.yml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,15 @@
# scRNA Core pipeline purposes
# Most are defined in the Limber config, but the below also need to be defined in Sequencescape.
# They are in a separate file so it can be 'feature flagged off' until needed.
---
# The 'LRC PBMC Pools' purpose is controlled by Limber. However, it has been
# added here to create submission and request type records for scRNA Core cDNA
# Prep stage.
---
LRC PBMC Pools:
stock_plate: false
cherrypickable_target: false
# The 'LRC PBMC Pools Input' purpose is included here so that it's available for
# sample manifests.
LRC PBMC Pools Input:
stock_plate: true
cherrypickable_target: false
8 changes: 8 additions & 0 deletions config/sample_manifest_excel/manifest_types.yml
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Expand Up @@ -255,6 +255,14 @@ plate_bioscan:
- :sample_type
- :donor_id
- :bioscan_control_type
plate_scrna_core_pools:
heading: "scRNA Core Pools Plate"
asset_type: "plate"
columns:
- :sanger_plate_id
- :well
- :sanger_sample_id
- :supplier_name
tube_default:
heading: "Default Tube"
asset_type: "1dtube"
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