feat(hiseq): sets superceded_by_id to -2 (unknown) for hiseq submissi…

…on templates in seed data
sanger · Jul 29, 2024 · a8d8180 · a8d8180
1 parent ec8a4a7
commit a8d8180
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Showing 2 changed files with 10 additions and 1 deletion.
diff --git a/lib/illumina_c/helper.rb b/lib/illumina_c/helper.rb
@@ -93,11 +93,15 @@ def skip_cherrypick=(skip)
     def each_submission_template
       cherrypick_options.each do |cherrypick|
         sequencing.each do |sequencing_request_type|
+          # Hiseq templates are hidden as of Y24-181 so we set them as superceeded by unknown
+          # This allows us to keep the template in case it needs to be restored but not make it visible
+          superceded_by_id = sequencing_request_type&.name&.downcase&.include?('hiseq') ? -2 : -1
           yield(
             {
               name: name_for(cherrypick, sequencing_request_type),
               submission_class_name: 'LinearSubmission',
               submission_parameters: submission_parameters(cherrypick, sequencing_request_type),
+              superceded_by_id:,
               product_line_id: ProductLine.find_by(name: PIPELINE).id,
               product_catalogue: catalogue
             }

diff --git a/lib/limber/helper.rb b/lib/limber/helper.rb
@@ -166,12 +166,17 @@ def each_submission_template
         sequencing_request_types.each do |sequencing_request_type|
           next if SubmissionTemplate.exists?(name: name_for(cherrypick, sequencing_request_type))
 
+          # Hiseq templates are hidden as of Y24-181 so we set them as superceeded by unknown
+          # This allows us to keep the template in case it needs to be restored but not make it visible
+          superceded_by_id = sequencing_request_type&.name&.downcase&.include?('hiseq') ? -2 : -1
+
           yield(
             {
               name: name_for(cherrypick, sequencing_request_type),
               submission_class_name: 'LinearSubmission',
               submission_parameters: submission_parameters(cherrypick, sequencing_request_type),
-              product_line_id: product_line_id,
+              superceded_by_id:,
+              product_line_id:,
               product_catalogue: catalogue
             }
           )