Merge branch 'develop' into api-v2-milestone-3

.release-version

@@ -1 +1 @@
-14.50.0
+14.51.0

config/default_records/plate_purposes/014_bge.wip.yml

@@ -0,0 +1,17 @@
+# Plate purposes for BGE
+---
+BGE Cherrypick:
+  type: PlatePurpose::Input
+  target_type: Plate
+  default_state: passed
+  stock_plate: false
+  cherrypickable_target: true
+  size: 96
+BGE Lib XP2:
+  target_type: Plate
+  stock_plate: false
+  size: 96
+BGE Lib PCR XP:
+  target_type: Plate
+  stock_plate: false
+  size: 96

config/default_records/product_catalogues/020_bge.wip.yml

@@ -0,0 +1,3 @@
+---
+BGE:
+  selection_behaviour: SingleProduct

config/default_records/request_types/018_limber_lcm_triomics_request_types.wip.yml

@@ -11,7 +11,7 @@ limber_lcm_triomics_emseq:
   acceptable_purposes:
     - LCMT Lysate
   library_types:
-    - LCM Triomics EMSeq
+    - emSEQ
 limber_lcm_triomics_wgs:
   name: LCM Triomics WGS
   asset_type: Well
@@ -23,4 +23,4 @@ limber_lcm_triomics_wgs:
   acceptable_purposes:
     - LCMT DNA Adp Lig
   library_types:
-    - LCM Triomics WGS
+    - LCMB

config/default_records/request_types/020_limber_high_throughput_bge.wip.yml

@@ -0,0 +1,37 @@
+---
+# Y24-366
+limber_bge_pcr_free:
+  asset_type: Well
+  order: 1
+  request_class_name: IlluminaHtp::Requests::StdLibraryRequest
+  billable: true
+  product_line_name: Illumina-HTP
+  name: Limber BGE PCR Free
+  acceptable_purposes:
+    - BGE Cherrypick
+  library_types:
+    - BGE
+# For moving PCR Free plates to ISC plates
+# e.g., BGE Lib XP2 -> BGE LIB PCR
+limber_bge_transition:
+  asset_type: Well
+  order: 1
+  billable: true
+  product_line_name: Illumina-HTP
+  name: Limber BGE Transition
+  request_class_name: IlluminaHtp::Requests::StdLibraryRequest
+  acceptable_purposes:
+    - BGE Lib XP2
+  library_types:
+    - BGE
+limber_bge_isc:
+  asset_type: Well
+  order: 1
+  billable: true
+  product_line_name: Illumina-HTP
+  name: Limber BGE ISC
+  request_class_name: Pulldown::Requests::IscLibraryRequest
+  acceptable_purposes:
+    - BGE Lib PCR XP
+  library_types:
+    - BGE

config/default_records/submission_templates/016_bge.wip.yml

@@ -0,0 +1,22 @@
+# Y24-366
+Limber-Htp - BGE PCR Free:
+  name: "Limber-Htp - BGE PCR Free"
+  submission_class_name: "LinearSubmission"
+  related_records:
+    product_line_name: Illumina-HTP
+    product_catalogue_name: BGE
+    request_type_keys: ["limber_bge_pcr_free", "limber_multiplexing"]
+Limber-Htp - BGE ISC:
+  name: "Limber-Htp - BGE ISC"
+  submission_class_name: "LinearSubmission"
+  related_records:
+    product_line_name: Illumina-HTP
+    product_catalogue_name: BGE
+    request_type_keys: ["limber_bge_isc", "limber_multiplexing", "illumina_htp_novaseqx_paired_end_sequencing"] # Other request types?
+Limber-Htp - BGE Transition - Automated:
+  name: "Limber-Htp - BGE Transition - Automated"
+  submission_class_name: "AutomatedOrder"
+  related_records:
+    product_line_name: Illumina-HTP
+    product_catalogue_name: BGE
+    request_type_keys: ["limber_bge_transition"] # Other request types?

config/sample_manifest_excel/manifest_types.yml

@@ -337,13 +337,20 @@ plate_anospp:
 plate_scrna_core_pools:
   heading: "scRNA Core Pools Plate"
   asset_type: "plate"
-  rows_per_well: 20
+  rows_per_well: 150 # this is a guess at the largest number of samples that will be pooled together
   columns:
     - :sanger_plate_id
     - :well
     - :sanger_sample_id
     - :supplier_name
     - :donor_id_mandatory
+    - :date_of_sample_collection
+    - :country_of_origin
+    - :gender
+    - :phenotype
+    - :sample_ebi_accession_number
+    - :sample_taxon_id
+    - :sample_common_name
 tube_default:
   heading: "Default Tube"
   asset_type: "1dtube"