Skip to content

DPL-823 [Part 2 - upload] Import PBMC pool plates into Sequencescape #5340

DPL-823 [Part 2 - upload] Import PBMC pool plates into Sequencescape

DPL-823 [Part 2 - upload] Import PBMC pool plates into Sequencescape #5340

Triggered via pull request March 8, 2024 13:15
Status Failure
Total duration 7m 57s
Artifacts 4

ruby_test.yml

on: pull_request
Matrix: cucumber_tests
Matrix: rspec_tests
end_coverage
0s
end_coverage
Fit to window
Zoom out
Zoom in

Annotations

12 errors and 20 warnings
rspec_tests (3, 0): spec/sample_manifest_excel/upload/upload_spec.rb#L47
SampleManifestExcel::Upload is invalid if there is no sanger sample id column Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 0): spec/sample_manifest_excel/upload/upload_spec.rb#L35
SampleManifestExcel::Upload is invalid if any of the headings do not relate to a column Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 0)
Process completed with exit code 1.
rspec_tests (3, 2)
The job was canceled because "_3_0" failed.
rspec_tests (3, 1)
The job was canceled because "_3_0" failed.
rspec_tests (3, 1): spec/models/sample_manifest/uploader_spec.rb#L23
SampleManifest::Uploader will not be valid without a filename Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 1): spec/models/sample_manifest/uploader_spec.rb#L27
SampleManifest::Uploader will not be valid without some configuration Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 1): spec/sample_manifest_excel/upload/rows_spec.rb#L21
SampleManifestExcel::Upload::Rows is not valid without some data Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 1): spec/sample_manifest_excel/upload/rows_spec.rb#L25
SampleManifestExcel::Upload::Rows is not valid without some columns Failure/Error: return unless items.first.plate_barcode && items.first.well_position NoMethodError: undefined method `plate_barcode' for nil:NilClass
rspec_tests (3, 1)
Process completed with exit code 1.
cucumber_tests (2, 1): features/sample_manifest/sample_manifest.feature#L75
Create a manifest then upload an excel file instead of a csv file failed: undefined method `plate_barcode' for nil:NilClass
cucumber_tests (2, 1)
Process completed with exit code 1.
rake_tests
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
rake_tests
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
rspec_tests (3, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-node@v2, actions/cache@v2, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
rspec_tests (3, 0)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-node@v2, actions/cache@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
rspec_tests (3, 0)
No files were found with the provided path: tmp/capybara/. No artifacts will be uploaded.
rspec_tests (3, 0): spec/lib/record_loader/request_type_validators_loader_spec.rb#L27
RecordLoader::RequestTypeValidatorsLoader with two_entry_example selected sets attributes on the created records Skipped: Temporarily skipped with xit
rspec_tests (3, 0): spec/lib/record_loader/request_type_validators_loader_spec.rb#L22
RecordLoader::RequestTypeValidatorsLoader with two_entry_example selected is idempotent Skipped: Temporarily skipped with xit
rspec_tests (3, 0): spec/lib/record_loader/request_type_validators_loader_spec.rb#L16
RecordLoader::RequestTypeValidatorsLoader with two_entry_example selected creates two records Skipped: Temporarily skipped with xit
rspec_tests (3, 1): spec/models/sample_manifest/generator_spec.rb#L132
SampleManifest::Generator with rows_per_well set generates a details array with more than one entry per well Skipped: No reason given
rspec_tests (3, 1): spec/models/sample_manifest/generator_spec.rb#L141
SampleManifest::Generator with rows_per_well not set generates a details array with one entry per well Skipped: No reason given
rspec_tests (3, 1): spec/models/plate_purpose/additional_input_spec.rb#L32
PlatePurpose::AdditionalInput#state_of with ancestors with no library requests is pending Skipped: Temporarily skipped with xit
rspec_tests (3, 1): spec/models/plate_purpose/additional_input_spec.rb#L43
PlatePurpose::AdditionalInput#state_of with ancestors with library requests is pending Skipped: Temporarily skipped with xit
rspec_tests (3, 1): spec/models/plate_purpose/additional_input_spec.rb#L64
PlatePurpose::AdditionalInput#state_of with no ancestors with library requests is passed Skipped: Temporarily skipped with xit
rspec_tests (3, 1): spec/models/plate_purpose/additional_input_spec.rb#L53
PlatePurpose::AdditionalInput#state_of with no ancestors with no library requests is pending Skipped: Temporarily skipped with xit
rspec_tests (3, 1): spec/models/plate_purpose/additional_input_spec.rb#L22
PlatePurpose::AdditionalInput#state_of with no requests is pending Skipped: Temporarily skipped with xit
rspec_tests (3, 1)
No files were found with the provided path: tmp/capybara/. No artifacts will be uploaded.
cucumber_tests (2, 0)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-node@v3, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
cucumber_tests (2, 0)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
cucumber_tests (2, 1)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-node@v3, actions/upload-artifact@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
cucumber_tests (2, 1)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/upload-artifact@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

Artifacts

Produced during runtime
Name Size
capybara-cucumber_tests-1 Expired
8.49 KB
codeclimate-cucumber_tests-0 Expired
1.59 MB
codeclimate-rake_tests- Expired
1.21 MB
codeclimate-rspec_tests-2 Expired
1.51 MB