Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

conf/test_full.config #30

Merged
merged 4 commits into from
Jul 18, 2024
Merged

conf/test_full.config #30

merged 4 commits into from
Jul 18, 2024

Conversation

DLBPointon
Copy link
Contributor

Spelling mistake

@DLBPointon
conf/test_full.config
fe03305 
Spelling mistake
@DLBPointon DLBPointon self-assigned this Jul 18, 2024
@github-actions GitHub Actions
Copy link

github-actions bot commented Jul 18, 2024 •
edited
Loading

nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit c51a3ac

+| ✅ 122 tests passed       |+
#| ❔  22 tests were ignored |#
!| ❗  10 tests had warnings |!

❗ Test warnings:

  • files_exist - File not found: .github/workflows/awstest.yml
  • files_exist - File not found: .github/workflows/awsfulltest.yml
  • nextflow_config - Config manifest.version should end in dev: '1.0.0'
  • readme - README contains the placeholder zenodo.XXXXXXX. This should be replaced with the zenodo doi (after the first release).
  • pipeline_todos - TODO string in README.md: Include a figure that guides the user through the major workflow steps. Many nf-core
  • pipeline_todos - TODO string in README.md: Add citation for pipeline after first release. Uncomment lines below and update Zenodo doi and badge at the top of this file.
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline
  • schema_lint - Input mimetype is missing or empty

❔ Tests ignored:

  • files_exist - File is ignored: assets/multiqc_config.yml
  • files_exist - File is ignored: assets/nf-core-curationpretext_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-curationpretext_logo_light.png
  • files_exist - File is ignored: docs/images/nf-core-curationpretext_logo_dark.png
  • nextflow_config - Config variable ignored: manifest.name
  • nextflow_config - Config variable ignored: manifest.homePage
  • files_unchanged - File ignored due to lint config: LICENSE or LICENSE.md or LICENCE or LICENCE.md
  • files_unchanged - File ignored due to lint config: .github/CONTRIBUTING.md
  • files_unchanged - File ignored due to lint config: .github/ISSUE_TEMPLATE/bug_report.yml
  • files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
  • files_unchanged - File ignored due to lint config: .github/workflows/branch.yml
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/email_template.txt
  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File does not exist: assets/nf-core-curationpretext_logo_light.png
  • files_unchanged - File does not exist: docs/images/nf-core-curationpretext_logo_light.png
  • files_unchanged - File does not exist: docs/images/nf-core-curationpretext_logo_dark.png
  • files_unchanged - File ignored due to lint config: docs/README.md
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy
  • files_unchanged - File ignored due to lint config: .gitignore or .prettierignore or pyproject.toml
  • actions_awstest - 'awstest.yml' workflow not found: /home/runner/work/curationpretext/curationpretext/.github/workflows/awstest.yml
  • multiqc_config - 'assets/multiqc_config.yml' not found

✅ Tests passed:

Run details

  • nf-core/tools version 2.8
  • Run at 2024-07-18 10:29:09

@DLBPointon DLBPointon requested a review from gq1 July 18, 2024 13:24
@DLBPointon DLBPointon merged commit b72aaac into dev Jul 18, 2024
6 checks passed
@DLBPointon DLBPointon deleted the dp24_spelling branch July 18, 2024 13:36
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@gq1 gq1 gq1 approved these changes

Assignees

@DLBPointon DLBPointon

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@DLBPointon @gq1