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chore: Add some extra context to README.md
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30 changes: 21 additions & 9 deletions README.Rmd
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Expand Up @@ -63,14 +63,26 @@ analyses.
remotes::install_github(repo = "lshtm-gigs/gigs")
```

## Terminology
## Rationale + terminology
```{r srr-tags-2, eval = FALSE, echo = FALSE}
#' @srrstats {G1.3} Explained z-scores and centiles prior to discussing
#' functions which convert between these and measured values.
```
GIGS operates on anthropometric measurements, and can convert between these and
*z-scores*/*centiles*. Z-scores and centiles represent the location of a
measurement within a normal distribution of values, such that:
When working with growth measurements from individual children, it is helpful to
compare those measurements to a growth standard, which represents average growth
for an population of children. This allows assessment of individual growth - for
example, that a baby was born small, but later caught up to its peers in size.
It also allows you to compare measurements from different children.

These standards of growth can be made in different ways, but the best studies
utilise international samples made of up thousands of healthy fetuses, newborns,
or children. In **gigs**, you'll find different international growth standards,
allowing you to compare growth measures from children with different ages,
weights, heights, and more.

In general, you'll use **gigs** to transform raw growth measures to *z-scores*
or *centiles*. Z-scores and centiles represent the location of a measurement
within a normal distribution of values, such that:

* A *z-score* is the number of standard deviations from the mean for a given
anthropometric measurement (e.g. height or weight).
Expand All @@ -81,11 +93,11 @@ measurement within a normal distribution of values, such that:
corresponds to the 75<sup>th</sup> centile.

In growth data, z-scores and centiles represent the size a fetus, newborn, or
child relative to its peers. Its size is considered relative to some
standardising variable, which is usually age but could also be another variable
such as their length. By tracking a child's relative size as they
grow, you can see if they are achieving their growth potential or not. If not,
this may indicate underlying issues such as ill health or undernutrition.
child relative to its peers. Size here is considered relative to a standardising
variable, which is usually age but could also be another variable such as their
length. By tracking a child's relative size as they grow, you can see if they
are achieving their growth potential or not. If not, this may indicate
underlying issues such as ill health or undernutrition.

## Classification functions
GIGS includes a number of functions which permit fast identification of at-risk
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38 changes: 25 additions & 13 deletions README.md
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Expand Up @@ -46,12 +46,24 @@ used in downstream analyses.
remotes::install_github(repo = "lshtm-gigs/gigs")
```

## Terminology
## Rationale + terminology

GIGS operates on anthropometric measurements, and can convert between
these and *z-scores*/*centiles*. Z-scores and centiles represent the
location of a measurement within a normal distribution of values, such
that:
When working with growth measurements from individual children, it is
helpful to compare those measurements to a growth standard, which
represents average growth for an population of children. This allows
assessment of individual growth - for example, that a baby was born
small, but later caught up to its peers in size. It also allows you to
compare measurements from different children.

These standards of growth can be made in different ways, but the best
studies utilise international samples made of up thousands of healthy
fetuses, newborns, or children. In **gigs**, you’ll find different
international growth standards, allowing you to compare growth measures
from children with different ages, weights, heights, and more.

In general, you’ll use **gigs** to transform raw growth measures to
*z-scores* or *centiles*. Z-scores and centiles represent the location
of a measurement within a normal distribution of values, such that:

- A *z-score* is the number of standard deviations from the mean for a
given anthropometric measurement (e.g. height or weight).
Expand All @@ -63,12 +75,12 @@ that:
centile.

In growth data, z-scores and centiles represent the size a fetus,
newborn, or child relative to its peers. Its size is considered relative
to some standardising variable, which is usually age but could also be
another variable such as their length. By tracking a child’s relative
size as they grow, you can see if they are achieving their growth
potential or not. If not, this may indicate underlying issues such as
ill health or undernutrition.
newborn, or child relative to its peers. Size here is considered
relative to a standardising variable, which is usually age but could
also be another variable such as their length. By tracking a child’s
relative size as they grow, you can see if they are achieving their
growth potential or not. If not, this may indicate underlying issues
such as ill health or undernutrition.

## Classification functions

Expand Down Expand Up @@ -466,8 +478,8 @@ Health Centre, London School of Hygiene & Tropical Medicine

### Citation

Parker SR, Vesel L, Ohuma EO (2023). *gigs: Assess Fetal, Newborn, and Child Growth with International Standards*.
<https://github.com/lshtm-gigs/gigs/>.
Parker S, Vesel L, Ohuma EO (2024). *gigs: Assess Fetal, Newborn, and
Child Growth*. <https://github.com/lshtm-gigs/gigs/>.

## Code of Conduct

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