The goal of AnlysisOfWaves is to easily reproduce the analysis of Ca2+ waves in the publication …
This package is only available in this git repository. You can install it from GitHub with:
# install.packages("devtools")
devtools::install_github("rjlopez2/AnlysisOfWaves")This is a basic example which shows you how plot the cumulative occurrence of Ca2+ waves obtained from linescan images:
library(AnlysisOfWaves)
wave_or_EAP_threshold <- 10 # Set time for highlighting the relative wave occurrence.
df_waves_intact_cells %>%
my_cum_occu_wave_plot_func(reffer_wave_thres = wave_or_EAP_threshold,
my_var = "Wave_latency",
base_size = 28, line_size = 2)