This project's goal is to illustrate how GitHub can be used to develop a software project (roughly) following the evolution in BIO-210, but with less code.
This is an openly developed project and we welcome community contributions, especially from BIO-210 students! We are happy to receive code extensions, bug fixes, documentation updates, etc. If you are a new user, we recommend checking out the detailed Github Guides.
- Python >= 3.5
- numpy
- scipy
- matplotlib
Specifially, I'm sharing a requirements file (req.txt)
conda create -n <environment-name> --file req.txt
You can (doc)test the LotkaVolterraModel by:
python3 LotkaVolterraModel.py
It should have no output (if all tests pass).
You can also get a detailed output pass verbose flag:
python3 LotkaVolterraModel.py -v
We also created unit-tests for the LotkaVolterraModel.py in test_LVM.py. You can also run the whole test-suite with
pytest
You can assess the coverage by running:
coverage run -m pytest
coverage report
This is also available via a bash script ./tests.sh.