Timeseries 012_023790_IW1 012_023790_IW1 #22
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| # n+1, n+2, n+3 pairs for a given burst | |
| name: Timeseries | |
| run-name: Timeseries ${{ inputs.fullBurstID }} ${{ inputs.fullBurstID }} | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| fullBurstID: | |
| type: string | |
| required: true | |
| description: ESA Burst Identifier (RelativeObit, ID, Subswath) | |
| default: '012_023790_IW1' | |
| polarization: | |
| type: choice | |
| required: true | |
| description: Polarization | |
| default: VV | |
| options: | |
| - VV | |
| - VH | |
| - HH | |
| nlooks: | |
| type: choice | |
| required: true | |
| description: Range x Azimuth Looks | |
| default: 20x4 | |
| options: | |
| - 20x4 | |
| - 10x2 | |
| - 5x1 | |
| jobs: | |
| searchASF: | |
| name: Burst=${{ inputs.fullBurstID }} | |
| runs-on: ubuntu-latest | |
| # Map a step output to a job output | |
| outputs: | |
| BURST_IDS: ${{ steps.asf-search.outputs.BURST_IDS }} | |
| MATRIX: ${{ steps.asf-search.outputs.MATRIX_PARAMS_COMBINATIONS }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| environment-file: environment.yml | |
| # https://words.yuvi.in/post/python-in-github-actions/ | |
| - name: Search ASF for bursts | |
| id: asf-search | |
| shell: bash -el -c "python -u {0}" | |
| run: | | |
| import asf_search as asf | |
| import json | |
| import os | |
| results = asf.search(platform=[asf.PLATFORM.SENTINEL1], | |
| processingLevel=asf.BURST, | |
| polarization="${{ inputs.polarization }}", | |
| fullBurstID="${{ inputs.fullBurstID }}") | |
| print('Results: ', len(results)) | |
| burstIDs = [x.meta['native-id'] for x in results] | |
| # Oldest First | |
| burstIDs.sort() | |
| # Create Matrix Job Mapping (JSON Array) | |
| pairs = [] | |
| for r in [0]: | |
| for s in [1,2,3]: | |
| ref = burstIDs[r] | |
| sec = burstIDs[r+s] | |
| shortname = f'{ref[14:22]}_{sec[14:22]}' | |
| pairs.append({'reference': ref, 'secondary': sec, 'name':shortname}) | |
| matrixJSON = f'{{"include":{json.dumps(pairs)}}}' | |
| with open(os.environ['GITHUB_OUTPUT'], 'a') as f: | |
| print(f'BURST_IDS={burstIDs}', file=f) | |
| print(f'MATRIX_PARAMS_COMBINATIONS={matrixJSON}', file=f) | |
| hyp3-isce2: | |
| needs: searchASF | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: ${{ fromJson(needs.searchASF.outputs.MATRIX) }} | |
| continue-on-error: true | |
| name: ${{ matrix.name }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'relativeorbit/hyp3-isce2' | |
| ref: 'stac' | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| environment-file: environment.yml | |
| - name: Development install | |
| run: pip install -e . | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-west-2 | |
| - name: Get Bucket Prefix | |
| env: | |
| REF: ${{ matrix.reference }} | |
| SEC: ${{ matrix.secondary }} | |
| BURST: ${{ inputs.fullBurstID }} | |
| run: | | |
| PREFIX=${BURST}/${REF:14:8}_${SEC:14:8} | |
| echo "PREFIX=${PREFIX}" >> $GITHUB_ENV | |
| - name: Run Hyp3-ISCE2 | |
| env: | |
| EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} | |
| EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD}} | |
| ESA_USERNAME: ${{ secrets.ESA_USERNAME }} | |
| ESA_PASSWORD: ${{ secrets.ESA_PASSWORD}} | |
| run: | | |
| python -m hyp3_isce2 ++process insar_tops_burst \ | |
| ${{ matrix.reference }} \ | |
| ${{ matrix.secondary }} \ | |
| --looks ${{ inputs.fullBurstID }} \ | |
| --apply-water-mask False \ | |
| # --bucket fufiters \ | |
| # --bucket-prefix $PREFIX | |
| - name: Create COGs + STAC Metadata | |
| run: | | |
| # Just install couple extra dependencies for script | |
| # pip install pystac rasterio rio-stac jsonschema | |
| ls | |
| python contrib/hyp3isce2stac.py | |
| - name: Upload to AWS S3 | |
| run: | | |
| OUTDIR=`ls -d S1_*` | |
| aws s3 sync $OUTDIR s3://fufiters/$PREFIX/$OUTDIR | |
| # - name: Upload Hyp3 Output | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: ${{ env.PREFIX }} | |
| # path: S1*.zip |