Timeseries #12
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # n+1, n+2, n+3 pairs for a given burst | |
| name: Timeseries | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| fullBurstID: | |
| type: string | |
| required: true | |
| description: ESA Burst Identifier (RelativeObit, ID, Subswath) | |
| default: '012_023790_IW1' | |
| polarization: | |
| type: choice | |
| required: true | |
| description: Polarization | |
| default: VV | |
| options: | |
| - VV | |
| - VH | |
| - HH | |
| nlooks: | |
| type: choice | |
| required: true | |
| description: Range x Azimuth Looks | |
| default: 20x4 | |
| options: | |
| - 20x4 | |
| - 10x2 | |
| - 5x1 | |
| jobs: | |
| searchASF: | |
| runs-on: ubuntu-latest | |
| # Map a step output to a job output | |
| outputs: | |
| BURST_IDS: ${{ steps.asf-search.outputs.BURST_IDS }} | |
| MATRIX: ${{ steps.asf-search.outputs.MATRIX_PARAMS_COMBINATIONS }} | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| environment-file: environment.yml | |
| # https://words.yuvi.in/post/python-in-github-actions/ | |
| - name: Search ASF for bursts | |
| id: asf-search | |
| shell: bash -el -c "python -u {0}" | |
| run: | | |
| import asf_search as asf | |
| import json | |
| import os | |
| results = asf.search(platform=[asf.PLATFORM.SENTINEL1], | |
| processingLevel=asf.BURST, | |
| polarization="${{ inputs.polarization }}", | |
| fullBurstID="${{ inputs.fullBurstID }}") | |
| print('Results: ', len(results)) | |
| burstIDs = [x.meta['native-id'] for x in results] | |
| # Oldest First | |
| burstIDs.sort() | |
| # Create Matrix Job Mapping (JSON Array) | |
| pairs = [] | |
| for r in [0]: | |
| for s in [1,2,3]: | |
| pairs.append({'reference': burstIDs[r], 'secondary': burstIDs[r+s]}) | |
| matrixJSON = f'{{"include":{json.dumps(pairs)}}}' | |
| with open(os.environ['GITHUB_OUTPUT'], 'a') as f: | |
| print(f'BURST_IDS={burstIDs}', file=f) | |
| print(f'MATRIX_PARAMS_COMBINATIONS={matrixJSON}', file=f) | |
| # - name: Test Burst Output | |
| # env: | |
| # BURST_IDS: ${{ steps.asf-search.outputs.BURST_IDS }} | |
| # MATRIX: ${{ steps.asf-search.outputs.MATRIX_PARAMS_COMBINATIONS }} | |
| # run: | | |
| # #echo $BURST_IDS | |
| # echo $MATRIX | |
| hyp3-isce2: | |
| needs: searchASF | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| matrix: ${{ fromJson(needs.searchASF.outputs.MATRIX) }} | |
| steps: | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: 'ASFHyP3/hyp3-isce2' | |
| - name: Install Conda environment with Micromamba | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| environment-file: environment.yml | |
| - name: Development install | |
| run: pip install -e . | |
| - name: Configure AWS Credentials | |
| uses: aws-actions/configure-aws-credentials@v4 | |
| with: | |
| aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| aws-region: us-west-2 | |
| - name: Get Bucket Prefix | |
| env: | |
| REF: ${{ matrix.reference }} | |
| SEC: ${{ matrix.secondary }} | |
| run: | | |
| PREFIX=${REF:14:8}_${SEC:14:8} | |
| echo "PREFIX=${PREFIX}" >> $GITHUB_ENV | |
| - name: Run Example Workflow | |
| env: | |
| EARTHDATA_USERNAME: ${{ secrets.EARTHDATA_USERNAME }} | |
| EARTHDATA_PASSWORD: ${{ secrets.EARTHDATA_PASSWORD}} | |
| ESA_USERNAME: ${{ secrets.ESA_USERNAME }} | |
| ESA_PASSWORD: ${{ secrets.ESA_PASSWORD}} | |
| run: | | |
| python -m hyp3_isce2 ++process insar_tops_burst \ | |
| ${{ matrix.reference }} \ | |
| ${{ matrix.secondary }} \ | |
| --looks 20x4 \ | |
| --apply-water-mask False \ | |
| # --bucket fufiters \ | |
| # --bucket-prefix $PREFIX | |
| - name: Create STAC Metadata | |
| run: | | |
| python scripts/hyp3isce2stac.py | |
| - name: Upload to AWS S3 | |
| run: | | |
| aws s3 sync S1_* s3://fufiters/$PREFIX | |
| # - name: Upload Hyp3 Output | |
| # uses: actions/upload-artifact@v4 | |
| # with: | |
| # name: ${{ env.PREFIX }} | |
| # path: S1*.zip |