Skip to content

@OHDSI Observational Health Data Sciences and Informatics

Change the repository type filter

All

    Repositories list

    318 repositories

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•35•3•Updated Jan 18, 2025Jan 18, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•26•0•Updated Jan 17, 2025Jan 17, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•0•11•0•Updated Jan 17, 2025Jan 17, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•227•223•12•Updated Jan 17, 2025Jan 17, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•39•3•Updated Jan 17, 2025Jan 17, 2025

    • Strategus

      Public
      An R package for coordinating and executing analytics using HADES modules
      R
      •11•6•19•7•Updated Jan 17, 2025Jan 17, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•11•0•Updated Jan 17, 2025Jan 17, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•5•0•Updated Jan 17, 2025Jan 17, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •90•189•36•3•Updated Jan 17, 2025Jan 17, 2025

    • context

      Public
      A python library to create knowledge graphs for context-aware prediction modeling and more.
      Python
      •0•0•1•0•Updated Jan 17, 2025Jan 17, 2025

    • Achilles

      Public
      Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database
      R
      •122•132•48•5•Updated Jan 17, 2025Jan 17, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Jan 16, 2025Jan 16, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •83•55•32•2•Updated Jan 16, 2025Jan 16, 2025

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•3•Updated Jan 16, 2025Jan 16, 2025

    • Bouzyges

      Public
      Python
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Jan 15, 2025Jan 15, 2025

    • Andromeda

      Public
      AsynchroNous Disk-based Representation of MassivE DAta: An R package aimed at replacing ff for storing large data objects.
      hades
      R
      •13•11•17•0•Updated Jan 15, 2025Jan 15, 2025

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      R
      •0•0•0•0•Updated Jan 14, 2025Jan 14, 2025

    • MIMIC

      Public
      MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.
      Python
      •
      Apache License 2.0
      •25•75•20•3•Updated Jan 14, 2025Jan 14, 2025

    • EmpiricalCalibration

      Public
      An R package for performing empirical calibration of observational study estimates
      hades
      R
      •9•10•2•0•Updated Jan 14, 2025Jan 14, 2025

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •6•8•3•0•Updated Jan 14, 2025Jan 14, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •15•15•1•2•Updated Jan 14, 2025Jan 14, 2025

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •8•20•19•1•Updated Jan 11, 2025Jan 11, 2025

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•4•Updated Jan 10, 2025Jan 10, 2025

    • ProtocolGenerator

      Public
      Converts a Strategus JSON specification into a human readable html document
      R
      •0•0•2•0•Updated Jan 10, 2025Jan 10, 2025

    • CohortDiagnostics

      Public
      An R package for performing various cohort diagnostics.
      hades
      R
      •50•42•31•2•Updated Jan 10, 2025Jan 10, 2025

    • AresIndexer

      Public
      R package that creates the index and relevant files for an Ares deployment.
      R
      •
      Apache License 2.0
      •5•1•17•1•Updated Jan 10, 2025Jan 10, 2025

    • circe-be

      Public
      CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5
      cohort-definitions
      Java
      •
      Apache License 2.0
      •13•9•7•7•Updated Jan 10, 2025Jan 10, 2025

    • Cyclops

      Public
      Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
      hades
      C++
      •33•39•19•1•Updated Jan 10, 2025Jan 10, 2025

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Jan 9, 2025Jan 9, 2025

    • TAB

      Public
      OHDSI Open Source Technical Advisory Board
      2•4•3•0•Updated Jan 9, 2025Jan 9, 2025