new release, fixes #157

oborel · Apr 11, 2017 · 76aaa19 · 76aaa19
1 parent 319b6f2
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diff --git a/go_cc_import.owl b/go_cc_import.owl
@@ -0,0 +1,142 @@
+<?xml version="1.0"?>
+<rdf:RDF xmlns="http://purl.obolibrary.org/obo/ro/go_mf_import.owl#"
+     xml:base="http://purl.obolibrary.org/obo/ro/go_mf_import.owl"
+     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
+     xmlns:obo="http://purl.obolibrary.org/obo/"
+     xmlns:owl="http://www.w3.org/2002/07/owl#"
+     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
+     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
+     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
+    <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro/go_cc_import.owl"/>
+
+
+
+    <!-- 
+    ///////////////////////////////////////////////////////////////////////////////////////
+    //
+    // Classes
+    //
+    ///////////////////////////////////////////////////////////////////////////////////////
+     -->
+
+    <!-- http://purl.obolibrary.org/obo/GO_0005634 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0005634">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">nucleus</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0008150 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0016020 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016020">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">membrane</rdfs:label>
+    </owl:Class>
+
+    <!-- http://purl.obolibrary.org/obo/GO_0030424 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030424">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043005"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">axon</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0030425 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030425">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043005"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">dendrite</rdfs:label>
+    </owl:Class>
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0042734 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042734">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016020"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044456"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">presynaptic membrane</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0042995 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042995">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">cell projection</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0043005 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043005">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0042995"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">neuron projection</rdfs:label>
+    </owl:Class>
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0044456 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044456">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">synapse part</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0044464 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044464">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">cell part</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0045202 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045202">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">synapse</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GO_0045211 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045211">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016020"/>
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044456"/>
+        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
+        <rdfs:label xml:lang="en">postsynaptic membrane</rdfs:label>
+    </owl:Class>
+
+</rdf:RDF>
+
+
+
+<!-- Generated by the OWL API (version 0.2.1-SNAPSHOT) http://owlapi.sourceforge.net -->
+
diff --git a/ro.obo b/ro.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2017-03-23
+data-version: releases/2017-04-11
 subsetdef: ro-eco ""
 subsetdef: RO:0002259 ""
 remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
@@ -10,6 +10,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/core.owl>) VersionIRI(<null>))) [Axioms: 276 Logical Axioms: 56]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/el-constraints.owl>) VersionIRI(<null>))) [Axioms: 6 Logical Axioms: 2]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go-biotic.owl>) VersionIRI(<null>))) [Axioms: 42 Logical Axioms: 16]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_cc_import.owl>) VersionIRI(<null>))) [Axioms: 49 Logical Axioms: 14]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_mf_import.owl>) VersionIRI(<null>))) [Axioms: 29 Logical Axioms: 9]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/pato_import.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 6]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/rohom.owl>) VersionIRI(<null>))) [Axioms: 731 Logical Axioms: 148]
@@ -4096,7 +4097,6 @@ name: results in movement of
 def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" []
 property_value: IAO:0000117 "Chris Mungall" xsd:string
 property_value: IAO:0000232 "" xsd:string
-domain: GO:0040011
 is_a: RO:0000057 ! has participant
 
 [Typedef]

diff --git a/ro.owl b/ro.owl
@@ -15,10 +15,11 @@
      xmlns:dc="http://purl.org/dc/elements/1.1/"
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/ro.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2017-03-23/ro.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/ro/releases/2017-04-11/ro.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/annotations.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/pato_import.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/temporal-intervals.owl"/>
+        <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/go_cc_import.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/go_mf_import.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/core.owl"/>
         <owl:imports rdf:resource="http://purl.obolibrary.org/obo/ro/rohom.owl"/>
@@ -6098,7 +6099,6 @@ the a supports either the existence of b, or the truth value of b.</obo:IAO_0000
 
     <owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002565">
         <rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0000057"/>
-        <rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/GO_0040011"/>
         <obo:IAO_0000115>Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c</obo:IAO_0000115>
         <obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
         <obo:IAO_0000232></obo:IAO_0000232>
@@ -7207,35 +7207,6 @@ Environments include natural environments or exposures, experimentally applied c
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0005634 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0005634">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">nucleus</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0008150 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000015"/>
-        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">biological_process</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0016020 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0016020">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">membrane</rdfs:label>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0016301 -->
 
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0016301">
@@ -7249,63 +7220,12 @@ Environments include natural environments or exposures, experimentally applied c
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0030424 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030424">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043005"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">axon</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0030425 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0030425">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0043005"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">dendrite</rdfs:label>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0040011 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0040011"/>
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0042734 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042734">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016020"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044456"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">presynaptic membrane</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0042995 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0042995">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044464"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">cell projection</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0043005 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0043005">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0042995"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">neuron projection</rdfs:label>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0044403 -->
 
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0044403">
@@ -7319,47 +7239,6 @@ Environments include natural environments or exposures, experimentally applied c
 
 
 
-    <!-- http://purl.obolibrary.org/obo/GO_0044456 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044456">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">synapse part</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0044464 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0044464">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">cell part</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0045202 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045202">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/CARO_0000014"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">synapse</rdfs:label>
-    </owl:Class>
-
-
-
-    <!-- http://purl.obolibrary.org/obo/GO_0045211 -->
-
-    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0045211">
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0016020"/>
-        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GO_0044456"/>
-        <obo:IAO_0000412 rdf:resource="http://purl.obolibrary.org/obo/go.owl"/>
-        <rdfs:label xml:lang="en">postsynaptic membrane</rdfs:label>
-    </owl:Class>
-
-
-
     <!-- http://purl.obolibrary.org/obo/GO_0072519 -->
 
     <rdf:Description rdf:about="http://purl.obolibrary.org/obo/GO_0072519">

diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -1,6 +1,6 @@
 OBO=http://purl.obolibrary.org/obo
 
-ONTS= ro.obo ro.owl ro.json annotations.owl core.owl go-biotic.owl pato_import.owl temporal-intervals.owl bfo-axioms.owl bfo-classes-minimal.owl el-constraints.owl go_mf_import.owl rohom.owl
+ONTS= ro.obo ro.owl ro.json annotations.owl core.owl go-biotic.owl pato_import.owl temporal-intervals.owl bfo-axioms.owl bfo-classes-minimal.owl el-constraints.owl go_mf_import.owl go_cc_import.owl rohom.owl
 
 # ========================================
 # PRODUCTION

diff --git a/src/ontology/ro.obo b/src/ontology/ro.obo
@@ -1,5 +1,5 @@
 format-version: 1.2
-data-version: releases/2017-03-23
+data-version: releases/2017-04-11
 subsetdef: ro-eco ""
 subsetdef: RO:0002259 ""
 remark: Includes Ontology(OntologyID(Anonymous-21)) [Axioms: 26 Logical Axioms: 0]
@@ -10,6 +10,7 @@ remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/core.owl>) VersionIRI(<null>))) [Axioms: 276 Logical Axioms: 56]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/el-constraints.owl>) VersionIRI(<null>))) [Axioms: 6 Logical Axioms: 2]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go-biotic.owl>) VersionIRI(<null>))) [Axioms: 42 Logical Axioms: 16]
+remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_cc_import.owl>) VersionIRI(<null>))) [Axioms: 49 Logical Axioms: 14]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/go_mf_import.owl>) VersionIRI(<null>))) [Axioms: 29 Logical Axioms: 9]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/pato_import.owl>) VersionIRI(<null>))) [Axioms: 20 Logical Axioms: 6]
 remark: Includes Ontology(OntologyID(OntologyIRI(<http://purl.obolibrary.org/obo/ro/rohom.owl>) VersionIRI(<null>))) [Axioms: 731 Logical Axioms: 148]
@@ -4096,7 +4097,6 @@ name: results in movement of
 def: "Holds between p and c when p is locomotion process and the outcome of this process is the change of location of c" []
 property_value: IAO:0000117 "Chris Mungall" xsd:string
 property_value: IAO:0000232 "" xsd:string
-domain: GO:0040011
 is_a: RO:0000057 ! has participant
 
 [Typedef]