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Remove injections about RO:has_skeleton.
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In RO, 'has skeleton' (RO:0002551) is domain-restricted to 'anatomical
structure' (UBERON:0000061) and range-restricted to 'material anatomical
entity' (UBERON:0000465).

Currently, in Uberon we are overriding those restrictions by injecting
tigher constraints: a domain restriction to 'organism subdivision'
(UBERON:0000475) and a range restriction to 'subdivision of skeleton'
(UBERON:0010912).

A ticket to upstream those tighter restrictions to RO has gone nowhere
in more than one year
(oborel/obo-relations#700).

This PR removes the Uberon-injected restrictions and leaves it to RO to
decide whether they should adopt them or not.

Of note, the only inferred axiom that those tighter restrictions give us
is this one:

> 'nose' SubClassOf: 'organism subdivision'

So we don't lose much by removing them until they are (maybe) added back
directly by RO.

Related to #2453
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gouttegd committed Nov 11, 2024
1 parent 2f8ec39 commit fce595c
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2 changes: 0 additions & 2 deletions src/ontology/uberon-edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -225264,8 +225264,6 @@ is_metadata_tag: true
id: has_skeleton
name: has skeleton
xref: RO:0002551
domain: UBERON:0000475 ! organism subdivision
range: UBERON:0010912 ! subdivision of skeleton

[Typedef]
id: has_start
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