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@nipreps

NeuroImaging PREProcessing toolS

NiPreps (NeuroImaging PREProcessing toolS)

Please visit www.nipreps.org for a more comprehensive description of this community. Don't forget to also learn about the sister initiative www.templateflow.org.

News and some discussions take place at the Nipreps GitHub discussions.

About

The current neuroimaging workflow has matured into a large chain of processing and analysis steps involving a large number of experts, across imaging modalities and applications. The development and fast adoption of fMRIPrep have revealed that neuroscientists need tools that simplify their research workflow, provide visual reports and checkpoints, and engender trust in the tool itself. The NiPreps framework extends fMRIPrep's approach and principles to new imaging modalities. The vision for NiPreps is to provide end-users (i.e., researchers) with applications that allow them to perform quality control smoothly and to prepare their data for modeling and statistical analysis.

Acknowledgments

This work is steered and maintained by the NiPreps Community. The development of this framework is supported the NIMH (RF1MH121867, RAP, OE).

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  1. fmriprep fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    HTML 644 296

  2. dmriprep dmriprep Public

    dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    Python 65 24

  3. smriprep smriprep Public

    Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

    Python 135 40

  4. mriqc mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 303 132

Repositories

Showing 10 of 53 repositories
  • nireports Public

    The NiPreps' Reporting and Visualization system - report templates and "reportlets"

    nipreps/nireports’s past year of commit activity
    Python 8 Apache-2.0 19 16 (1 issue needs help) 9 Updated Jan 9, 2025
  • nifreeze Public

    An open-source framework for volume-to-volume motion estimation in d/fMRI and PET, and Eddy-current-derived distortion estimation in dMRI

    nipreps/nifreeze’s past year of commit activity
    Python 0 Apache-2.0 1 24 13 Updated Jan 9, 2025
  • niworkflows Public

    Common workflows for MRI (anatomical, functional, diffusion, etc)

    nipreps/niworkflows’s past year of commit activity
    Python 90 Apache-2.0 52 61 (3 issues need help) 11 Updated Jan 8, 2025
  • fmriprep Public

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

    nipreps/fmriprep’s past year of commit activity
    HTML 644 Apache-2.0 296 305 (24 issues need help) 11 Updated Jan 8, 2025
  • fmripost-phase Public

    An attempt at an fMRIPost workflow for handling phase data

    nipreps/fmripost-phase’s past year of commit activity
    Python 3 Apache-2.0 1 13 0 Updated Jan 8, 2025
  • nibabies Public

    fMRIPrep-Infants - A robust, transparent workflow tailored for neonate and infant MRI

    nipreps/nibabies’s past year of commit activity
    Python 23 Apache-2.0 11 33 3 Updated Jan 8, 2025
  • mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    nipreps/mriqc’s past year of commit activity
    Python 303 Apache-2.0 132 59 (11 issues need help) 7 Updated Jan 8, 2025
  • nipreps.github.io Public

    The NiPreps landing page

    nipreps/nipreps.github.io’s past year of commit activity
    Python 3 CC0-1.0 11 6 (1 issue needs help) 1 Updated Jan 7, 2025
  • fmriprep_stats Public

    Automatic reports summarizing usage stats from Sentry.io

    nipreps/fmriprep_stats’s past year of commit activity
    Jupyter Notebook 4 1 0 1 Updated Jan 7, 2025
  • fmripost-aroma Public

    Run ICA-AROMA on fMRIPrep derivatives

    nipreps/fmripost-aroma’s past year of commit activity
    Python 9 Apache-2.0 2 16 2 Updated Jan 6, 2025