Merge pull request #454 from nfdi4plants/restructure-sidebar

quickfix collate manuals in sidebar
nfdi4plants · Sep 19, 2024 · e58f808 · e58f808
2 parents 706958a + 32db3c1
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diff --git a/src/docs/_sidebars/mainSidebar.md b/src/docs/_sidebars/mainSidebar.md
@@ -26,80 +26,81 @@
 ## [DataPLAN](/docs/implementation/DataPLAN.html)
 ## [Ontology Service Landscape](/docs/implementation/OntologyServiceLandscape.html)
 
-# [ARC Commander Manual](/docs/ArcCommanderManual/index.html)
-## [Setup](/docs/ArcCommanderManual/index-setup.html)
-### [Git Installation](/docs/ArcCommanderManual/arc_installation_git.html)
-### [ARC Commander Installation](/docs/ArcCommanderManual/arc_installation.html)
-#### [Windows](/docs/ArcCommanderManual/arc_installation_windows.html)
-#### [MacOS](/docs/ArcCommanderManual/arc_installation_macos.html)
-#### [Linux](/docs/ArcCommanderManual/arc_installation_linux.html)
-### [ARC Commander DataHUB Access](/docs/ArcCommanderManual/arc_access.html)
-## [Before we start](/docs/ArcCommanderManual/arc_before_we_start.html)
-## [Central Functions](/docs/ArcCommanderManual/arc_initialization.html)
-### [Initialize](/docs/ArcCommanderManual/arc_initialization.html)
-### [Clone](/docs/ArcCommanderManual/arc_get.html)
-### [Connect](/docs/ArcCommanderManual/arc_connect.html)
-### [Synchronize](/docs/ArcCommanderManual/arc_synchronization.html)
-### [Configure](/docs/ArcCommanderManual/arc_config.html)
-### [Branch](/docs/ArcCommanderManual/arc_branch.html)
-## [ISA Metadata Functions](/docs/ArcCommanderManual/arc_isa.html)
-### [ISA Metadata](/docs/ArcCommanderManual/arc_isa.html)
-#### [Investigation](/docs/ArcCommanderManual/arc_isa_investigation.html)
-#### [Study](/docs/ArcCommanderManual/arc_isa_study.html)
-#### [Assay](/docs/ArcCommanderManual/arc_isa_assay.html)
-### [Update](/docs/ArcCommanderManual/arc_update.html)
-### [Export](/docs/ArcCommanderManual/arc_export.html)
-
-# [ARCitect Manual](/docs/ARCitect-Manual/index.html)
-## [Installation - Windows](/docs/ARCitect-Manual/arcitect_installation_windows.html)
-## [Installation - macOS](/docs/ARCitect-Manual/arcitect_installation_macos.html)
-## [Installation - Linux](/docs/ARCitect-Manual/arcitect_installation_linux.html)
-## [QuickStart](/docs/guides/arcitect_QuickStart.html)
-## [QuickStart - Videos](/docs/guides/arcitect_QuickStart_Videos.html)
-
-# [ARCmanager Manual](/docs/ARCmanager-manual/00_index.html)
-## [What is the ARCmanager?](/docs/ARCmanager-manual/01_intro.html)
-## [Connect to your DataHUB](/docs/ARCmanager-manual/02_login.html)
-## [View your ARCs](/docs/ARCmanager-manual/03_view_ARCs.html)
-## [Create new ARCs](/docs/ARCmanager-manual/04_create_ARCs.html)
-## [Add new studies and assays](/docs/ARCmanager-manual/05_studies_assays.html)
-## [Upload files](/docs/ARCmanager-manual/05_uploading_files.html)
-## [Add metadata to your ARCs](/docs/ARCmanager-manual/06_adding_metadata.html)
-
-# [Swate Manual](/docs/SwateManual/index.html)
-## [QuickStart](/docs/guides/swate_QuickStart.html)
-## [QuickStart - Videos](/docs/guides/swate_QuickStart_Videos.html)
-## [Annotation tables](/docs/SwateManual/Docs02-Annotation-Table.html)
-## [Building blocks](/docs/SwateManual/Docs03-Building-Blocks.html)
-### [Building Block Types](/docs/SwateManual/swate_blocks_types.html)
-### [Adding a Building Block](/docs/SwateManual/swate_blocks_add.html)
-## [Filling cells with ontology terms](/docs/SwateManual/Docs04-Ontology-Term-Search.html)
-## [Advanced Term Search](/docs/SwateManual/Docs07-Advanced-Term-Search.html)
-## [File Picker](/docs/SwateManual/Using-the-File-Picker.html)
-## [Templates](/docs/SwateManual/Docs05-Templates.html)
-## [Contribute Templates](/docs/guides/swate_template-contribution.html)
-## [ISA-JSON](/docs/SwateManual/Docs06-ISA-JSON.html)
-
-# [DataHUB Manual](/docs/DataHUB-Manual/index.html)
-## [Overview](/docs/DataHUB-Manual/datahub-overview.html)
-## [User Settings](/docs/DataHUB-Manual/datahub-userSettings.html)
-### [Generate a Personal Access Token (PAT)](/docs/guides/datahub-GeneratePAT.html)
-## [Projects Panel](/docs/DataHUB-Manual/datahub-projectsPanel.html)
-## [ARC Panel](/docs/DataHUB-Manual/datahub-ARCPanel.html)
-### [Forks](/docs/DataHUB-Manual/datahub-fork.html)
-### [Working with files](/docs/DataHUB-Manual/datahub-files.html)
-### [ARC Settings](/docs/DataHUB-Manual/datahub-ARCSettings.html)
-### [ARC Wiki](/docs/DataHUB-Manual/datahub-ARCWiki.html)
-## [Groups Panel](/docs/DataHUB-Manual/datahub-groupsPanel.html)
-### [Create a new user group](/docs/DataHUB-Manual/datahub-CreateGroup.html)
-## [CQC Pipelines & validation](/docs/DataHUB-Manual/cqc-pipelines/cqc-pipelines.html)
-### [Find and use ARC validation packages](/docs/DataHUB-Manual/cqc-pipelines/validation-packages.html)
-Continuous Quality Control (CQC) p
-## [Data publications](/docs/DataHUB-Manual/datahub-data-publications.html)
-### [Passing Continuous Quality Control](/docs/DataHUB-Manual/datahub-data-publications-cqc.html)
-### [Submitting ARCs with ARChigator](/docs/DataHUB-Manual/datahub-data-publications-archigator.html)
-### [Track publication status](/docs/DataHUB-Manual/datahub-data-publications-status.html)
-### [Use your DOIs](/docs/DataHUB-Manual/datahub-data-publications-dois.html)
+# [Manuals](/docs/manuals-index.html)
+
+## [ARC Commander](/docs/ArcCommanderManual/index.html)
+### [Setup](/docs/ArcCommanderManual/index-setup.html)
+#### [Git Installation](/docs/ArcCommanderManual/arc_installation_git.html)
+#### [ARC Commander Installation](/docs/ArcCommanderManual/arc_installation.html)
+##### [Windows](/docs/ArcCommanderManual/arc_installation_windows.html)
+##### [MacOS](/docs/ArcCommanderManual/arc_installation_macos.html)
+##### [Linux](/docs/ArcCommanderManual/arc_installation_linux.html)
+#### [ARC Commander DataHUB Access](/docs/ArcCommanderManual/arc_access.html)
+### [Before we start](/docs/ArcCommanderManual/arc_before_we_start.html)
+### [Central Functions](/docs/ArcCommanderManual/arc_initialization.html)
+#### [Initialize](/docs/ArcCommanderManual/arc_initialization.html)
+#### [Clone](/docs/ArcCommanderManual/arc_get.html)
+#### [Connect](/docs/ArcCommanderManual/arc_connect.html)
+#### [Synchronize](/docs/ArcCommanderManual/arc_synchronization.html)
+#### [Configure](/docs/ArcCommanderManual/arc_config.html)
+#### [Branch](/docs/ArcCommanderManual/arc_branch.html)
+### [ISA Metadata Functions](/docs/ArcCommanderManual/arc_isa.html)
+#### [ISA Metadata](/docs/ArcCommanderManual/arc_isa.html)
+##### [Investigation](/docs/ArcCommanderManual/arc_isa_investigation.html)
+##### [Study](/docs/ArcCommanderManual/arc_isa_study.html)
+##### [Assay](/docs/ArcCommanderManual/arc_isa_assay.html)
+#### [Update](/docs/ArcCommanderManual/arc_update.html)
+#### [Export](/docs/ArcCommanderManual/arc_export.html)
+
+## [ARCitect](/docs/ARCitect-Manual/index.html)
+### [Installation - Windows](/docs/ARCitect-Manual/arcitect_installation_windows.html)
+### [Installation - macOS](/docs/ARCitect-Manual/arcitect_installation_macos.html)
+### [Installation - Linux](/docs/ARCitect-Manual/arcitect_installation_linux.html)
+### [QuickStart](/docs/guides/arcitect_QuickStart.html)
+### [QuickStart - Videos](/docs/guides/arcitect_QuickStart_Videos.html)
+
+## [ARCmanager](/docs/ARCmanager-manual/00_index.html)
+### [What is the ARCmanager?](/docs/ARCmanager-manual/01_intro.html)
+### [Connect to your DataHUB](/docs/ARCmanager-manual/02_login.html)
+### [View your ARCs](/docs/ARCmanager-manual/03_view_ARCs.html)
+### [Create new ARCs](/docs/ARCmanager-manual/04_create_ARCs.html)
+### [Add new studies and assays](/docs/ARCmanager-manual/05_studies_assays.html)
+### [Upload files](/docs/ARCmanager-manual/05_uploading_files.html)
+### [Add metadata to your ARCs](/docs/ARCmanager-manual/06_adding_metadata.html)
+
+## [Swate](/docs/SwateManual/index.html)
+### [QuickStart](/docs/guides/swate_QuickStart.html)
+### [QuickStart - Videos](/docs/guides/swate_QuickStart_Videos.html)
+### [Annotation tables](/docs/SwateManual/Docs02-Annotation-Table.html)
+### [Building blocks](/docs/SwateManual/Docs03-Building-Blocks.html)
+#### [Building Block Types](/docs/SwateManual/swate_blocks_types.html)
+#### [Adding a Building Block](/docs/SwateManual/swate_blocks_add.html)
+### [Filling cells with ontology terms](/docs/SwateManual/Docs04-Ontology-Term-Search.html)
+### [Advanced Term Search](/docs/SwateManual/Docs07-Advanced-Term-Search.html)
+### [File Picker](/docs/SwateManual/Using-the-File-Picker.html)
+### [Templates](/docs/SwateManual/Docs05-Templates.html)
+### [Contribute Templates](/docs/guides/swate_template-contribution.html)
+### [ISA-JSON](/docs/SwateManual/Docs06-ISA-JSON.html)
+
+## [DataHUB](/docs/DataHUB-Manual/index.html)
+### [Overview](/docs/DataHUB-Manual/datahub-overview.html)
+### [User Settings](/docs/DataHUB-Manual/datahub-userSettings.html)
+#### [Generate a Personal Access Token (PAT)](/docs/guides/datahub-GeneratePAT.html)
+### [Projects Panel](/docs/DataHUB-Manual/datahub-projectsPanel.html)
+### [ARC Panel](/docs/DataHUB-Manual/datahub-ARCPanel.html)
+#### [Forks](/docs/DataHUB-Manual/datahub-fork.html)
+#### [Working with files](/docs/DataHUB-Manual/datahub-files.html)
+#### [ARC Settings](/docs/DataHUB-Manual/datahub-ARCSettings.html)
+#### [ARC Wiki](/docs/DataHUB-Manual/datahub-ARCWiki.html)
+### [Groups Panel](/docs/DataHUB-Manual/datahub-groupsPanel.html)
+#### [Create a new user group](/docs/DataHUB-Manual/datahub-CreateGroup.html)
+### [CQC Pipelines & validation](/docs/DataHUB-Manual/cqc-pipelines/cqc-pipelines.html)
+#### [Find and use ARC validation packages](/docs/DataHUB-Manual/cqc-pipelines/validation-packages.html)
+### [Data publications](/docs/DataHUB-Manual/datahub-data-publications.html)
+#### [Passing Continuous Quality Control](/docs/DataHUB-Manual/datahub-data-publications-cqc.html)
+#### [Submitting ARCs with ARChigator](/docs/DataHUB-Manual/datahub-data-publications-archigator.html)
+#### [Track publication status](/docs/DataHUB-Manual/datahub-data-publications-status.html)
+#### [Use your DOIs](/docs/DataHUB-Manual/datahub-data-publications-dois.html)
 
 # [Guides](/docs/guides/index.html)
 ## [ARC User Journey](/docs/guides/ARCUserJourney.html)

diff --git a/src/docs/manuals-index.md b/src/docs/manuals-index.md
@@ -0,0 +1,10 @@
+---
+title: Manuals
+layout: docs
+date: 2024-09-19
+add toc: false
+add support: false
+add sidebar: _sidebars/mainSidebar.md
+---
+
+Here you find manuals for the ARC-related tools and services.