Merge pull request #5 from nebiolabs/bug/#4

Should not delete ladder peaks
nebiolabs · Apr 22, 2021 · a92825f · a92825f
2 parents 071f963 + d7278fd
commit a92825f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/fatools/lib/fautil/algo2.py b/fatools/lib/fautil/algo2.py
@@ -1526,7 +1526,7 @@ def mark_overlap_peaks(channels, params):
     # checking overlaps against channel !
     for channel in channels:
         for channel_r in channels:
-            if channel == channel_r:
+            if channel == channel_r or or channel.is_ladder():
                 continue
 
             for p in channel.get_alleles(broad_peaks_only=False):