requirements #5

	name: Tests with Spark

	on:
	push:
	branches:
	- dev-tests
	pull_request:
	branches:
	- main

	jobs:
	test:
	runs-on: ubuntu-latest

	strategy:
	matrix:
	python:
	- '3.10'
	- '3.11'
	spark:
	- 3.4.0

	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	- uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python }}

	- uses: actions/setup-java@v4
	with:
	java-version: '21'
	distribution: temurin

	# https://github.com/marketplace/actions/setup-apache-spark
	- uses: vemonet/setup-spark@v1
	with:
	spark-version: ${{ matrix.spark }}
	hadoop-version: '3'

	- run: spark-submit --version

	# Download and install ANTs
	- name: Install ANTs
	run: \|
	wget https://github.com/ANTsX/ANTs/releases/download/v2.5.3/ants-2.5.3-ubuntu-20.04-X64-gcc.zip
	unzip ants-2.5.3-ubuntu-20.04-X64-gcc.zip -d $HOME/
	rm ants-2.5.3-ubuntu-20.04-X64-gcc.zip
	echo "ANTs installed successfully"

	- name: Install test dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install -r tests/requirements.txt --no-cache-dir

	- name: Install voluseg
	run: \|
	pip install -r requirements.txt --no-cache-dir
	pip install . --no-cache-dir

	- name: Run tests with pytest
	env:
	ANTS_PATH: $HOME/ants-2.5.3/bin
	INPUT_PATH: /path/to/input # Set this to the actual input path
	run: \|
	pytest --cov=voluseg --cov-report=term-missing

	- name: Upload coverage report
	if: success()
	uses: actions/upload-artifact@v3
	with:
	name: coverage-report
	path: htmlcov/

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