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Hi.
I tried to use .h5 file as data source and it didn't go smooth.
Here are some fixes that allowed me to iterate through a file created using pandas.HDFStore.
__new__
method (object.__new__
).Seems some time ago HDF5Dataset was based on DenseDesignMatrix but now its just Dataset and this code path breaks.
Not sure how the interaction is designed to be.
One problem was that pytables returns numpy array of lists instead of tuples and this breaks https://github.com/lisa-lab/pylearn2/blob/master/pylearn2/space/__init__.py#L1481 since the array is 1-dimensional.
Second one is iterator calling
np_format_as
on tuple of tuples which failsis_numeric_batch
check.I'm a total novice with pylearn2. Please tell me if this can be implemented in more canonical way.