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117 processgeospatialera5 reanalysis#153

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Commits on Feb 12, 2024

• Edits to fix linting

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Commits on Feb 13, 2024

• Re-structured code into functions

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• Added tests for the new functions (16 tests in total)

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Commits on Feb 14, 2024

• Merge remote-tracking branch 'origin/main' into 30-re-structure-the-code-such-that-each-metric-download-is-in-its-own-function

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• Implemented new method of parsing credentials and new functionality of specifying path of credentials file

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• Re-ran tests in different folder

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• WIP: re-structuring the B script

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Commits on Feb 16, 2024

• WIP

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Commits on Feb 28, 2024

• WIP

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Commits on Mar 11, 2024

• Finished processing CHIRPS data

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Commits on Mar 12, 2024

• Finished processing all data

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Commits on Apr 5, 2024

• Re-structured the B script

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• Minor changes

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Commits on Apr 8, 2024

• Updated tests

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• All except 7 tests (in test_process_data.py) have been implemented

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Commits on May 1, 2024

• Finished testing the processing of meteorological data

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Commits on May 2, 2024

• Added test_process_geospatial_meteorological_data() and test_process_gadm_chirps_data()

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• Added tests for the processing of geospatial and sociodemographic data

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Commits on May 3, 2024

• Merge branch '30-re-structure-the-code-such-that-each-metric-download-is-in-its-own-function' into 47-process-terraclimate-data

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• Re-ran on macOS

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Commits on Jul 31, 2024

• Merge remote-tracking branch 'origin/main' into 47-process-terraclimate-data

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Commits on Aug 7, 2024

• Finished writing and testing

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Commits on Aug 8, 2024

• Update .gitignore

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Commits on Aug 9, 2024

• Suggested changes and formatting

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Commits on Sep 25, 2024

• All get functions working except dengue/peru

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Commits on Sep 30, 2024

• WIP

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• Updated gitignore

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Commits on Oct 3, 2024

• Aggregating RWI by region and updating existing data if it exists

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Commits on Oct 4, 2024

• Fixed RWI aggregation and updating

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• Merge branch '120-aggregate-relative-wealth-index-data-by-region' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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• Minor changes

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• GADM+CHIRPS data being unpacked and processed for different levels and timeframes

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• Updating documentation

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Commits on Oct 14, 2024

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Commits on Oct 16, 2024

• Added test_update_or_create_output_create_new() and test_update_or_create_output_update_existing() to test_util.py

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• Added test_update_or_create_output_invalid_input() to check for invalid input

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Commits on Oct 22, 2024

• Merge remote-tracking branch 'origin/main' into 47-process-terraclimate-data

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• Merge branch '120-aggregate-relative-wealth-index-data-by-region' into 47-process-terraclimate-data

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• WIP

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Commits on Oct 30, 2024

• Exporting multiple terraclimate metrics to a CSV that updates and also to plots now working

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• Merge remote-tracking branch 'origin/47-process-terraclimate-data' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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Commits on Nov 4, 2024

• Merge remote-tracking branch 'origin/main' into 122-bug-chirps-rainfall-data-not-working-for-all-partial-data-types

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• Added the stash back in

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• Merge remote-tracking branch 'origin/main' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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Commits on Nov 5, 2024

• Changed get chirps_rainfall_data() input to be a partial date

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• Completed process_chirps_rainfall_data()

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Commits on Nov 7, 2024

• Completed and testing geospatial/chirps-rainfall and meteorological/chirps-rainfall

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Commits on Nov 8, 2024

• Updated README

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• Fixing failing tests

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• Fixing failing tests

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• Fixing failing tests

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• Fixing failing tests

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Commits on Nov 10, 2024

• Created plot_heatmap()

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• Plotting chirps-rainfall and terraclimate

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• Added tests

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Commits on Nov 11, 2024

• Merge branch '119-confirm-existing-metrics-run-through-the-re-factored-pipeline' of github.com:kraemer-lab/DART-Pipeline into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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• Merge remote-tracking branch 'origin/122-bug-chirps-rainfall-data-not-working-for-all-partial-data-types' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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• Merge remote-tracking branch 'origin/107-move-plotting-functions-to-plotspy' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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• Fixing failing tests

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• Fixing failing tests

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• Fixing failing tests

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• Fixing failing tests

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Commits on Nov 12, 2024

• Merge remote-tracking branch 'origin/main' into 107-move-plotting-functions-to-plotspy

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• Refactoring RWI

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• Added plotting to RWI

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• Minor change

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Commits on Nov 13, 2024

• Changed the plotting functions to produce either macro level or micro level borders

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• Added tests

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• Fixing failing tests

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• Merge remote-tracking branch 'origin/107-move-plotting-functions-to-plotspy' into 119-confirm-existing-metrics-run-through-the-re-factored-pipeline

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• Minor changes

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Commits on Nov 14, 2024

• Added tests

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• Fixing failing tests

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• Fixing failing tests

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• Re-formatted the output

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• Fixing failing tests

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• Added test_process_gadm_worldpopcount()

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• Merge branch '126-geospatialworldpop-count' into 128-economicrelative-wealth-index

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• Added test

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Commits on Nov 18, 2024

• WIP

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Commits on Nov 20, 2024

• Added standardisation of output CSV and plotting

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• Merging with existing data is now working

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• Added test for the collate function

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Commits on Nov 21, 2024

• Added test for the process function

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• Fixing failing tests

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• Fixing failing tests

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• Merge remote-tracking branch 'origin/main' into 135-meteorologicalaphrodite-daily-precip

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• Merge remote-tracking branch 'origin/main' into 126-geospatialworldpop-count

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Commits on Nov 26, 2024

• Collating, processing and plotting working for the non-aggregated sub-pipeline

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• Added tests for the collation and processing functions

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• Merge remote-tracking branch 'origin/126-geospatialworldpop-count' into 135-meteorologicalaphrodite-daily-precip

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• Added test_plot_scatter() and test_plot_timeseries()

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• Added plot_gadm_scatter(), process_gadm_aphroditeprecipitation(), test_process_gadm_aphroditeprecipitation()

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• Added test_plot_gadm_scatter()

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• Merge remote-tracking branch 'origin/126-geospatialworldpop-count' into 139-meteorologicalaphrodite-daily-mean-temp

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• Merge remote-tracking branch 'origin/128-economicrelative-wealth-index' into 139-meteorologicalaphrodite-daily-mean-temp

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• Merge remote-tracking branch 'origin/130-epidemiologicaldengueperu' into 139-meteorologicalaphrodite-daily-mean-temp

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• Merge remote-tracking branch 'origin/135-meteorologicalaphrodite-daily-precip' into 139-meteorologicalaphrodite-daily-mean-temp

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Commits on Nov 27, 2024

• Collating Aphordite temperature data

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• Added test_process_aphrodite_precipitation_data()

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• Added process_gadm_aphroditetemperature() and test_process_gadm_aphroditetemperature()

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• Merge remote-tracking branch 'origin/126-geospatialworldpop-count' into 140-sourcesmeteorologicalera5-reanalysis

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• Merge remote-tracking branch 'origin/128-economicrelative-wealth-index' into 140-sourcesmeteorologicalera5-reanalysis

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• Merge remote-tracking branch 'origin/130-epidemiologicaldengueperu' into 140-sourcesmeteorologicalera5-reanalysis

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• Merge remote-tracking branch 'origin/139-meteorologicalaphrodite-daily-mean-temp' into 140-sourcesmeteorologicalera5-reanalysis

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• Merge remote-tracking branch 'origin/126-geospatialworldpop-count' into 142-sociodemographicworldpop-count

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• Merge remote-tracking branch 'origin/128-economicrelative-wealth-index' into 142-sociodemographicworldpop-count

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• Merge remote-tracking branch 'origin/130-epidemiologicaldengueperu' into 142-sociodemographicworldpop-count

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• Merge remote-tracking branch 'origin/135-meteorologicalaphrodite-daily-precip' into 142-sociodemographicworldpop-count

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• Merge remote-tracking branch 'origin/139-meteorologicalaphrodite-daily-mean-temp' into 142-sociodemographicworldpop-count

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• Updates to process_worldpop_pop_count_data(), added test_process_worldpop_pop_count_data() and fixed failing tests

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Commits on Dec 2, 2024

• Merge remote-tracking branch 'origin/main' into 128-economicrelative-wealth-index

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• Merge remote-tracking branch 'origin/128-economicrelative-wealth-index' into 130-epidemiologicaldengueperu

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• Merge remote-tracking branch 'origin/130-epidemiologicaldengueperu' into 135-meteorologicalaphrodite-daily-precip

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• Merge remote-tracking branch 'origin/135-meteorologicalaphrodite-daily-precip' into 139-meteorologicalaphrodite-daily-mean-temp

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• Merge remote-tracking branch 'origin/140-sourcesmeteorologicalera5-reanalysis' into 142-sociodemographicworldpop-count

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• Merge remote-tracking branch 'origin/139-meteorologicalaphrodite-daily-mean-temp' into 142-sociodemographicworldpop-count

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Commits on Dec 4, 2024

• Merge remote-tracking branch 'origin/main' into 130-epidemiologicaldengueperu

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• Merge remote-tracking branch 'origin/130-epidemiologicaldengueperu' into 135-meteorologicalaphrodite-daily-precip

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Commits on Dec 11, 2024

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• Merge remote-tracking branch 'origin/140-sourcesmeteorologicalera5-reanalysis' into 142-sociodemographicworldpop-count

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• Re-ran the sub-pipelines

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Commits on Dec 16, 2024

• Addressing comments

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• Added test

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Commits on Dec 17, 2024

• Merge branch '130-epidemiologicaldengueperu' into 135-meteorologicalaphrodite-daily-precip

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• Merge branch '135-meteorologicalaphrodite-daily-precip' into 139-meteorologicalaphrodite-daily-mean-temp

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Commits on Dec 18, 2024

• Merge branch '130-epidemiologicaldengueperu' into 141-processmeteorologicalera5-reanalysis

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• Merge branch '142-sociodemographicworldpop-count' into 141-processmeteorologicalera5-reanalysis

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• Fixed the downloading of raw data

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• Processing function complete

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Commits on Dec 20, 2024

• Process function complete and tested

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Commits on Jan 5, 2025

• Collation test fixed

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• Added runtime

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Commits on Jan 6, 2025

• Added process_gadm_era5reanalysis and test

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• Fixed error with the terraclimate pipeline

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Commits on Jan 8, 2025

• Merge remote-tracking branch 'origin/main' into 135-meteorologicalaphrodite-daily-precip

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• Merge branch '135-meteorologicalaphrodite-daily-precip' into 139-meteorologicalaphrodite-daily-mean-temp

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• Removed temperature functions

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• Added temperature back in

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• Merge branch '139-meteorologicalaphrodite-daily-mean-temp' into 142-sociodemographicworldpop-count

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• Added to index file

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• Merge branch '140-sourcesmeteorologicalera5-reanalysis' into 141-processmeteorologicalera5-reanalysis

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• Merge branch '141-processmeteorologicalera5-reanalysis' into 117-processgeospatialera5-reanalysis

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