Phytophthora Genome Data

Data (assemblies, gene predictions and annotations) from the genome sequencing projects of Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae.

Jamie McGowan jamie.mcgowan@mu.ie

Genome Evolution Lab, Maynooth University

Citation

McGowan J, O’Hanlon R, Owens RA, Fitzpatrick DA. 2020. Comparative Genomic and Proteomic Analyses of Three Widespread Phytophthora Species: Phytophthora chlamydospora, Phytophthora gonapodyides and Phytophthora pseudosyringae. Microorganisms 8:653.

DOI: 10.3390/microorganisms8050653

Data

{Pchlamydospora,Pgonapodyides,Ppseudosyringae}

• *_assembly.fna - Nuclear genome assembly
• *_mitochondrion.fna - Mitochondrial genome assembly
• *.gff - GFF of predicted gene models
• *.faa - Amino acid sequences for predicted protein coding genes
• *_interproscan.tsv - InterProScan annotation (InterPro, Pfam, GO) of predicted genes
• *_eggNOG.xlsx - Excel spreadsheet containing eggNOG functional annotations