Master back to dev #98
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Merging 0.1 dev branch to main
Before christmas version push
* 🚋 ride for 🐛 fixing in threshold and ensemble * Update CITATION.cff * Small fix with weighted mean and multi-band rasters * gdalUtilities switch, removing PCA for now owing to unit test issues downstream. * Fixing previous 🐛 introduced through controls revamping * Make sure partial is consistent across methods and works for several x.var * Kleines Upsi mit aes und ggplot2 * Bugfix in partial gdb when only_linear = F * x axis label for partial * All x.var = NULL for partial() * Make ribbons easier to see * Inconcistency in partial breg for newdata * Some minor fixes partial engines * Fix and clean gdb partial * Fix stan partial * Cln docs (#85) * Remove usage (constructed automatically) * Update globals * Fix truncated examples * Remove exportMethod (export should be enough) * Fixing and cleaning docs for RCMD * Some re-ordering and cleaning of DESCRIPTION and ibis.iSDM-package.R * Remove @method tag (roxygen should be able to figure it out itself) * Added @method were actaully needed * Remove not need @import sf * Cleaner ImportFrom * Small cosmetic changes to docs * Revert "Small cosmetic changes to docs" This reverts commit 6265e89. * Small cosmetic doc changes * Make internals easier to find * Keywords dont need a comma * Fixed introduced bug in examples * sf and stars dont export their classes, so we cant use @importClassesFrom * Update NEWS * I dont think we need to export the setOldClass call? * Only include scripts that define classes and methods * Make sure pgkdown.yml still runs * Update CITATION.cff * Remove skip_on_travis (deprecated) * Added parameter to allow threshold compositing #84 * Changing class and objects to R6 throughout (#88) * Class type conversions from proto to R6 and documentation #44 * Turning zoom meetings into documentation #44 * All proto classes renamed and removed #44 * All bdproto calls removed throughout #44 * `bdproto` now also from engines removed #44 * All tests solve without issues #44 * Minor doc fixes before merge #44 * Update CITATION.cff * Small documentation fix and vignette fix for runner * Documentation update and `rm_biodiversity` addition. * fix #91 * close #92 * Use update.formula to be consistent * Clone model before writting to disk. Bug in load_model due to missing engine class (outcommented for now) * Adding wrap_model function * Fix for object inheritance and class checks #44 * Added default parameters for all ibis specific options #90 * No warning thin_obs removing ojbects * Small 🐛 fix to `write_output` * 🐛 Adding 1e-15 to y_pred in logloss * Changing behaviour of weights in `engine_inlabru()` #93 --------- Co-authored-by: Martin-Jung <Martin-Jung@users.noreply.github.com> Co-authored-by: mhesselbarth <mhk.hesselbarth@gmail.com>
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