Travis (#1)

.travis.yml

@@ -6,13 +6,11 @@ cache:
 - "/tmp/texlive"
 - "/$HOME/texlive"
 warnings_are_errors: false
-r_github_packages:
-- HughParsonage/TeXCheckR
-- HughParsonage/grattanReporter
 before_install:
 - source ./travis/texlive.sh
 - tlmgr update --self
-- tlmgr install acronym bigfoot blindtext chngcntr cmap nowidow mdframed navigator
+- tlmgr install acronym bigfoot blindtext chngcntr cmap nowidow mdframed navigator 
+  ocgx2 media9 makecell
   needspace tablefootnote tocloft xpatch multirow bbding mathastext isomath relsize
   niceframe-type1
 - if [ $TRAVIS_REPO_SLUG == "HughParsonage/grattex" ]; then tlmgr install tex-gyre
@@ -28,15 +26,21 @@ before_script:
 - tar xzf biber-linux_x86_64.tar.gz
 - export PATH=$PATH:$PWD
 - tlmgr update biber chngcntr
+- sudo apt-get install -y r-cran-devtools r-cran-rcpp r-cran-bh r-cran-stringi r-cran-hunspell r-cran-survey r-cran-dplyr r-cran-tidyr r-cran-readr r-cran-ggplot2 r-cran-ggrepel r-cran-haven r-cran-survival
 - Rscript travis-make.R
-- pdflatex -interaction=nonstopmode CGT_and_neg_gearing_parent.Rnw > /dev/null
+
+script: 
+- Rscript -e 'knitr::knit("CGT_and_neg_gearing_parent.Rnw", quiet = TRUE)'
+- pdflatex -interaction=nonstopmode CGT_and_neg_gearing_parent.tex > /dev/null
+- pdflatex -interaction=nonstopmode CGT_and_neg_gearing_parent.tex
 - biber CGT_and_neg_gearing_parent
-- pdflatex -interaction=batchmode CGT_and_neg_gearing_parent.Rnw > /dev/null
-- pdflatex -interaction=batchmode CGT_and_neg_gearing_parent.Rnw > /dev/null
+- pdflatex -interaction=batchmode CGT_and_neg_gearing_parent.tex > /dev/null
+- pdflatex -interaction=batchmode CGT_and_neg_gearing_parent.tex > /dev/null
 deploy:
   provider: releases
   api_key:
     secure: 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
   file: CGT_and_neg_gearing_parent.pdf
   on:
     repo: grattan/NegativeGearing2016
+    branch: master

CGT_and_neg_gearing_parent-CHUNKTIMINGS.txt

@@ -1,7 +1,9 @@
- 10.1	loadPackages
-  0.0	loadHILDA
+ 20.5	loadPackages
+  0.1	loadHILDA
+  1.2	EarlySessionInfo
+  0.0	make_negatives_NA
   0.0	prohibit_quiet_censoring
-  0.4	downloadGrattex
+  0.0	downloadGrattex
   0.0	latex_dollar
   0.0	latex_percent
   0.0	select_which_
@@ -11,118 +13,119 @@
   0.0	cgt_reducer_due_to_policy
   0.0	load_sample_file
   0.4	create-age-imp
-  0.4	target_sample_file
+  0.5	target_sample_file
   0.0	Import-HILDA-all-waves-step-1
-  1.2	Import-SIH
+  2.5	Import-SIH
   0.0	Import-misc-ATO
   0.0	individuals_table1_201516
   0.0	individuals_table1
   0.0	CGT-by-entity-get
-  4.0	Determine_future_rental_deductions
-  0.0	cgt_discount_density
+  5.3	Determine_future_rental_deductions
+  0.1	cgt_discount_density
   0.0	cost-new-CGT-discount
   0.0	revenue_abolish_NG
   0.0	probNG_if_investor
   0.0	revenue_quarantine_NG_year0
   0.0	revenue_quarantine_NG
   0.0	revenue_quarantine_NG_2
   0.0	henry_taxstats
-  5.7	Summary-chunk
-  1.3	revenue_foregone_CG_and_NG
+ 12.7	Summary-chunk
+  1.4	revenue_foregone_CG_and_NG
   0.1	CostofNGtotal
   0.0	CGT-by-entity
-  0.8	CGT-by-entity-asset
+  2.1	CGT-by-entity-asset
   0.0	CG-delay-EMTR
-  0.1	CG-marginal-tax-rates
-  0.4	CGT-by-age-taxable-income
-  0.3	CGT-by-age-income
+  0.3	CG-marginal-tax-rates
+  1.8	CGT-by-age-taxable-income
+  1.4	CGT-by-age-income
   0.0	meanPositive
-  0.4	CGT-by-age-income-weight-CG
+  1.6	CGT-by-age-income-weight-CG
   0.0	ROR_CG
   0.0	emtr_savings
-  0.4	delaying-realization-causes-reduction-in-effective-tax-rate
+  1.3	delaying-realization-causes-reduction-in-effective-tax-rate
   0.0	should_we_get_ABS
   0.0	ABS_GET_RES_VALS
   0.0	house-prices
   0.0	surya
   0.0	surya-low-returns
   0.0	return_rental
-  0.1	emtr_rental
-  0.3	EMTR-nominal-real-excess-historic-vs-lower
+  0.6	emtr_rental
+  0.7	EMTR-nominal-real-excess-historic-vs-lower
   0.0	emtr_nominal_historic_lower_assumptions
-  0.1	assumptions-table
-  0.9	Maintaining-the-progressive-tax-system
-  0.3	CG-by-decile
-  0.0	30-45-with-high-CG-no-other-income
+  0.2	assumptions-table
+  1.2	Maintaining-the-progressive-tax-system
+  0.8	CG-by-decile
+  0.1	30-45-with-high-CG-no-other-income
   0.0	sih_prop_assets_in_OO_super
-  0.8	stacked-column-chart
+  2.2	stacked-column-chart
   0.0	Prop-of-costs-interest
-  0.1	dan-box
-  0.0	NG-by-age
-  0.3	NG-PG-by-age
-  2.1	individuals-share-holdings
+  0.3	dan-box
+  0.1	NG-by-age
+  0.8	NG-PG-by-age
+  0.0	individuals-share-holdings
   0.0	tot_intrst_unincorp_biz
-  0.0	total_bizlosses
-  0.4	EMTR-by-gearing
-  0.4	number-NG-time-series
-  0.2	avg-net-losses-time-series
-  0.3	number-of-investors-by-gearing
-  0.0	prop_rental_deductions_gross_rent
+  0.1	total_bizlosses
+  0.6	EMTR-by-gearing
+  0.9	number-NG-time-series
+  0.6	avg-net-losses-time-series
+  0.8	number-of-investors-by-gearing
+  0.1	prop_rental_deductions_gross_rent
   0.0	NG-basic-stats
-  0.3	Net-rent-time-series
+  0.7	Net-rent-time-series
   0.0	prop_le_80k
-  1.5	tx-inc-distr-by-NG
-  1.3	tx-inc-distr-by-NG-latest
-  0.9	Decile_constructor
-  0.4	Benefit-NG-before-after-deductions
-  0.1	impact-of-policy-changes-on-after-tax-returns
+  1.7	tx-inc-distr-by-NG
+  1.9	tx-inc-distr-by-NG-latest
+  1.0	Decile_constructor
+  0.8	Benefit-NG-before-after-deductions
+  0.4	impact-of-policy-changes-on-after-tax-returns
   0.0	price-changes-due-NG-box
   0.0	price-changes-due-CG-box
   0.0	value_of_property
   0.0	impact-of-policy-changes-on-after-tax-returns-tbl
-  0.0	impact-of-policy-changes-on-after-tax-returns-tbl-2heading
-  4.8	Impact_of_NG_on_house_prices
-  3.9	What_price_change_req_to_obtain_same_return
-  0.2	Owner_occupiers_loans_are_being_outnumbered_by_investors
+  0.1	impact-of-policy-changes-on-after-tax-returns-tbl-2heading
+  3.5	Impact_of_NG_on_house_prices
+  2.8	What_price_change_req_to_obtain_same_return
+  0.8	Owner_occupiers_loans_are_being_outnumbered_by_investors
   0.0	percent_of_prop_value_due_NG
-  0.5	Capital_city_rents_1ROW-2COL
-  0.7	Capital_city_rents_direct_abs
+  1.3	Capital_city_rents_1ROW-2COL
+  1.6	Capital_city_rents_direct_abs
   0.0	ABS-lending-data
   0.0	cost_NG_limited_to
   0.0	number_affected
   0.0	cost_of_policy_carry_fwd
-  2.2	HILDA-Number-of-properties
+  0.0	HILDA-Number-of-properties
   0.0	Number-households-SIH
-  0.7	bizLosses-by-occ
-  0.0	bizLosses
-  0.0	bizLosses-for-PP
-  0.2	PP-losses-by-occ
-  0.5	PP-losers-salary-comparison-evil-chart
-  0.5	PP-losers-salary-comparison-horiz-bar
-  0.4	Proportions-PP-losses
-  1.5	PP-losers-salary-comparison-ggrepel
-  2.0	density-salary-by-PP-losses
+  0.8	bizLosses-by-occ
+  0.1	bizLosses
+  0.1	bizLosses-for-PP
+  0.3	PP-losses-by-occ
+  1.0	PP-losers-salary-comparison-evil-chart
+  1.4	PP-losers-salary-comparison-horiz-bar
+  0.8	Proportions-PP-losses
+  2.3	PP-losers-salary-comparison-ggrepel
+  4.9	density-salary-by-PP-losses
   0.0	bizLosses-for-NPP
   0.1	costing-quarantining-losses
   0.0	benefit-due-NG
-  1.4	NG-vs-salary
-  1.6	Results
+  2.4	NG-vs-salary
+  3.2	Results
   0.0	prop_landlords_n_properties
- 32.1	HILDA-duration-of-NG
+ 65.7	HILDA-duration-of-NG
   0.0	ggsurv-NG
-  1.3	Survival-NG-analysis-hilda
-  0.3	NG-survival-curve
+  1.6	Survival-NG-analysis-hilda
+  1.0	NG-survival-curve
   0.0	haley-box
   0.0	percent1_01_TeX
   0.0	digit_01_TeX
-  0.0	EMTR_Appendix_Table
+  0.1	EMTR_Appendix_Table
   0.0	emtr-long-appendix
-  0.0	emtr-long-appendix-cellcolored
-  0.9	sessionInfo
+  0.1	emtr-long-appendix-cellcolored
+  0.0	on_travis_cleaning
+  0.0	sessionInfo
   0.0	platform_info
   0.0	addtorow
   0.0	loaded_packages
   0.1	the_attached_packages
-  0.4	packcageCitation
+  0.6	packageCitation
   0.0	Is-HILDA-used
   0.0	FINISH-TIME