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Updating workflows/proteomics/clinicalmp/clinicalmp-verification from 0.1 to 0.2 #636

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Updating workflows/proteomics/clinicalmp/clinicalmp-verification from 0.1 to 0.2 #636

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13 changes: 9 additions & 4 deletions workflows/proteomics/clinicalmp/clinicalmp-verification/CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,4 +1,9 @@
# Changelog

## [0.1] 2024-11-19
First release.
# Changelog

## [0.2] 2024-12-16

### Automatic update
- `toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0` was updated to `toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0`

## [0.1] 2024-11-19
First release.
16 changes: 8 additions & 8 deletions workflows/proteomics/clinicalmp/clinicalmp-verification/clinicalmp-verification.ga
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Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,7 @@
"format-version": "0.1",
"license": "CC-BY-4.0",
"name": "Clinical Metaproteomics Verification Workflow",
"release": "0.1",
"release": "0.2",
"report": {
"markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"
},
Expand Down Expand Up @@ -122,7 +122,7 @@
"inputs": [
{
"description": "The MGF files from mass spectrometry data.",
"name": "Input MGFs"
"name": "Tandem Mass Spectrometry (MS/MS) datasets"
}
],
"label": "Tandem Mass Spectrometry (MS/MS) datasets",
Expand Down Expand Up @@ -822,7 +822,7 @@
},
"21": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0",
"content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0",
"errors": null,
"id": 21,
"input_connections": {
Expand Down Expand Up @@ -850,15 +850,15 @@
"top": 1098.0954229032784
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.4.0",
"tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/uniprotxml_downloader/uniprotxml_downloader/2.5.0",
"tool_shed_repository": {
"changeset_revision": "a371252a2cf6",
"changeset_revision": "4ddc8da62671",
"name": "uniprotxml_downloader",
"owner": "galaxyp",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"__input_ext\": \"input\", \"__workflow_invocation_uuid__\": \"08a702aa736d11ee91a5001e67d2ec02\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"format\": \"fasta\", \"input_method\": {\"input_choice\": \"history\", \"__current_case__\": 2, \"id_file\": {\"__class__\": \"ConnectedValue\"}, \"column\": \"1\", \"field\": \"accession\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.4.0",
"tool_state": "{\"__input_ext\": \"input\", \"__workflow_invocation_uuid__\": \"08a702aa736d11ee91a5001e67d2ec02\", \"chromInfo\": \"/opt/galaxy/tool-data/shared/ucsc/chrom/?.len\", \"format\": \"fasta\", \"format_cond\": {\"format\": \"fasta\", \"__current_case__\": 0}, \"input_method\": {\"input_choice\": \"history\", \"__current_case__\": 2, \"id_file\": {\"__class__\": \"ConnectedValue\"}, \"column\": \"1\", \"field\": \"accession\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "2.5.0",
"type": "tool",
"uuid": "93ad396e-e41b-4ea8-8d90-c28e0ca1d0c7",
"when": null,
Expand Down Expand Up @@ -931,4 +931,4 @@
],
"uuid": "22302833-4954-4414-8725-d8bf74d6ffd0",
"version": 2
}
}
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