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Merge latest 24.2 into dev. #19392

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  • This is a refactoring of components with existing test coverage.

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  • I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

jmchilton and others added 17 commits December 30, 2024 19:17
Planemo calls `verify_tool` with a maxseconds value,
and then sets `tool_test_dict.setdefault("maxseconds", maxseconds)`,
which fails, since we are serializing and already setting the default
maxseconds while parsing the test dict.

Fixes the IUC tool test timeouts not working when testing against 24.2.
Broken in
galaxyproject@9695ccc#diff-06835be1d1943ebce8373e2cd1f8e86c7b7813b720398850c978b734dd29e2daR1390
(maxseconds was prviously not serialized at all in
`ToolTestDescription.to_dict`)
…rsing

[24.2] Fix timeout handling for planemo / galaxy-tool-util
Co-authored-by: Ahmed Hamid Awan <qe66653@umbc.edu>
…l_fixes

[24.2] Fix for empty string in regex validator message.
…onal

[24.2] Fix to not display upload when creating collections from existing datasets.
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