Merge pull request #94 from muellerdo/development

Drop CI/CD from Travis-CI and replaced it with GitHub Actions

.github/workflows/python-package.yml

@@ -0,0 +1,35 @@
+# This workflow will install Python dependencies and run tests with a variety of Python versions
+# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
+# CUSTOM Modifications by Dominik Müller (2021)
+
+name: Python package
+
+on:
+  push:
+    branches: [ master, development ]
+  pull_request:
+    branches: [ master, development ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version: [3.7, 3.8]
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install pytest
+        if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+    - name: Test with pytest
+      run: |
+        pytest -v

requirements.txt

@@ -1,12 +1,12 @@
-numpy==1.18.5
+numpy==1.19.2
 pandas==1.1.4
 tensorflow==2.5.0
 tensorflow-addons==0.13.0
 nibabel==3.1.0
 matplotlib==3.3.1
 pillow==8.2.0
-batchgenerators==0.20.1
+batchgenerators==0.21
 pydicom==2.0.0
 SimpleITK==2.0.2
-scikit-image==0.15.0
+scikit-image==0.18.2
 tqdm==4.51.0

setup.py

@@ -16,19 +16,19 @@
    long_description=long_description,
    long_description_content_type="text/markdown",
    packages=find_packages(),
-   python_requires='>=3.6',
+   python_requires='>=3.7',
    install_requires=['tensorflow==2.5.0',
                      'tensorflow-addons==0.13.0',
-                     'numpy>=1.18.5',
+                     'numpy==1.19.2',
                      'pandas>=1.1.4',
                      'tqdm==4.51.0',
                      'nibabel>=3.1.0',
                      'matplotlib==3.3.1',
                      'pillow==8.2.0',
-                     'batchgenerators>=0.20.1',
+                     'batchgenerators>=0.21',
                      'pydicom==2.0.0',
                      'SimpleITK==2.0.2',
-                     'scikit-image==0.15.0'],
+                     'scikit-image==0.18.2'],
    classifiers=["Programming Language :: Python :: 3",
                 "Programming Language :: Python :: 3.6",
                 "Programming Language :: Python :: 3.7",