Refactor SOLiD code into new module under 'platforms' #221
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Moves and reimplements the code for handling SOLiD sequencing data from
bcftbx.SolidData
into a new module inplatforms.solid.data
, and frombcftbx.Experiment
intoplatforms.solid.experiment
.The refactoring includes removing the leading
Solid
from class names (e.g.SolidSample
becomes justSample
etc) and changing some method names from camel-case (e.g.getLibraries
) to more conventional underscore-separated formats (e.g.get_libraries
). (NBSolidRun
has been renamed toRunDir
.)The
SolidData
module has been reimplemented as wrappers around the classes inplatforms.solid.data
(and theExperiment
module as wrappers forplatforms.solid.experiment
), with the old class and method names still supported for backwards compatibility. It is anticipated that if this PR is merged then the legacySolidData.py
andExperiment
modules will be removed.