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build(deps): bump the python-packages group with 7 updates #490

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merged 1 commit into from
Jan 2, 2025

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@dependabot dependabot bot commented on behalf of github Jan 1, 2025

Bumps the python-packages group with 7 updates:

Package From To
scikit-learn 1.5.2 1.6.0
boto3 1.35.36 1.35.88
commitizen 4.0.0 4.1.0
ruff 0.8.1 0.8.4
mypy 1.13.0 1.14.1
ipython 8.18.0 8.18.1
nbsphinx 0.9.5 0.9.6

Updates scikit-learn from 1.5.2 to 1.6.0

Release notes

Sourced from scikit-learn's releases.

Scikit-learn 1.6.0

We're happy to announce the 1.6.0 release.

You can read the release highlights under https://scikit-learn.org/stable/auto_examples/release_highlights/plot_release_highlights_1_6_0.html and the long version of the change log under https://scikit-learn.org/stable/whats_new/v1.6.html

This version supports Python versions 3.9 to 3.13 and features an experimental support of free-threaded CPython.

You can upgrade with pip as usual:

pip install -U scikit-learn

The conda-forge builds can be installed using:

conda install -c conda-forge scikit-learn
Commits

Updates boto3 from 1.35.36 to 1.35.88

Commits
  • 2693d3b Merge branch 'release-1.35.88'
  • ff72dee Bumping version to 1.35.88
  • 6d4f181 Add changelog entries from botocore
  • 40ff5ed Merge branch 'release-1.35.87'
  • b6bc541 Merge branch 'release-1.35.87' into develop
  • 6c0a1bc Bumping version to 1.35.87
  • bb61ca4 Add changelog entries from botocore
  • 84a4b27 Merge branch 'release-1.35.86'
  • 69d3b7b Merge branch 'release-1.35.86' into develop
  • 2f685aa Bumping version to 1.35.86
  • Additional commits viewable in compare view

Updates commitizen from 4.0.0 to 4.1.0

Release notes

Sourced from commitizen's releases.

v4.1.0 (2024-12-06)

Feat

  • commit: allow '-- --allow-empty' to create empty commits

[master 27499d72] bump: version 4.0.0 → 4.1.0 4 files changed, 10 insertions(+), 4 deletions(-)

Changelog

Sourced from commitizen's changelog.

v4.1.0 (2024-12-06)

Feat

  • commit: allow '-- --allow-empty' to create empty commits
Commits
  • 27499d7 bump: version 4.0.0 → 4.1.0
  • 636a069 feat(commit): allow '-- --allow-empty' to create empty commits
  • 26152c5 build(deps-dev): bump ruff from 0.8.1 to 0.8.2
  • 619575f build(deps-dev): bump ruff from 0.8.0 to 0.8.1
  • 6436b15 build(deps-dev): bump pytest from 8.3.3 to 8.3.4
  • 69403dd build(deps-dev): bump mkdocs-material from 9.5.46 to 9.5.47
  • a6b84d1 build(deps-dev): bump pre-commit from 3.8.0 to 4.0.1
  • 42e6399 build(deps-dev): bump pytest-cov from 5.0.0 to 6.0.0
  • bb2f8a7 style: fix ruff warned style
  • 7e23626 build(deps-dev): bump ruff from 0.7.4 to 0.8.0
  • See full diff in compare view

Updates ruff from 0.8.1 to 0.8.4

Release notes

Sourced from ruff's releases.

0.8.4

Release Notes

Preview features

  • [airflow] Extend AIR302 with additional functions and classes (#15015)
  • [airflow] Implement moved-to-provider-in-3 for modules that has been moved to Airflow providers (AIR303) (#14764)
  • [flake8-use-pathlib] Extend check for invalid path suffix to include the case "." (PTH210) (#14902)
  • [perflint] Fix panic in PERF401 when list variable is after the for loop (#14971)
  • [perflint] Simplify finding the loop target in PERF401 (#15025)
  • [pylint] Preserve original value format (PLR6104) (#14978)
  • [ruff] Avoid false positives for RUF027 for typing context bindings (#15037)
  • [ruff] Check for ambiguous pattern passed to pytest.raises() (RUF043) (#14966)

Rule changes

  • [flake8-bandit] Check S105 for annotated assignment (#15059)
  • [flake8-pyi] More autofixes for redundant-none-literal (PYI061) (#14872)
  • [pydocstyle] Skip leading whitespace for D403 (#14963)
  • [ruff] Skip SQLModel base classes for mutable-class-default (RUF012) (#14949)

Bug

  • [perflint] Parenthesize walrus expressions in autofix for manual-list-comprehension (PERF401) (#15050)

Server

  • Check diagnostic refresh support from client capability which enables dynamic configuration for various editors (#15014)

Contributors

... (truncated)

Changelog

Sourced from ruff's changelog.

0.8.4

Preview features

  • [airflow] Extend AIR302 with additional functions and classes (#15015)
  • [airflow] Implement moved-to-provider-in-3 for modules that has been moved to Airflow providers (AIR303) (#14764)
  • [flake8-use-pathlib] Extend check for invalid path suffix to include the case "." (PTH210) (#14902)
  • [perflint] Fix panic in PERF401 when list variable is after the for loop (#14971)
  • [perflint] Simplify finding the loop target in PERF401 (#15025)
  • [pylint] Preserve original value format (PLR6104) (#14978)
  • [ruff] Avoid false positives for RUF027 for typing context bindings (#15037)
  • [ruff] Check for ambiguous pattern passed to pytest.raises() (RUF043) (#14966)

Rule changes

  • [flake8-bandit] Check S105 for annotated assignment (#15059)
  • [flake8-pyi] More autofixes for redundant-none-literal (PYI061) (#14872)
  • [pydocstyle] Skip leading whitespace for D403 (#14963)
  • [ruff] Skip SQLModel base classes for mutable-class-default (RUF012) (#14949)

Bug

  • [perflint] Parenthesize walrus expressions in autofix for manual-list-comprehension (PERF401) (#15050)

Server

  • Check diagnostic refresh support from client capability which enables dynamic configuration for various editors (#15014)

0.8.3

Preview features

  • Fix fstring formatting removing overlong implicit concatenated string in expression part (#14811)
  • [airflow] Add fix to remove deprecated keyword arguments (AIR302) (#14887)
  • [airflow]: Extend rule to include deprecated names for Airflow 3.0 (AIR302) (#14765 and #14804)
  • [flake8-bugbear] Improve error messages for except* (B025, B029, B030, B904) (#14815)
  • [flake8-bugbear] itertools.batched() without explicit strict (B911) (#14408)
  • [flake8-use-pathlib] Dotless suffix passed to Path.with_suffix() (PTH210) (#14779)
  • [pylint] Include parentheses and multiple comparators in check for boolean-chained-comparison (PLR1716) (#14781)
  • [ruff] Do not simplify round() calls (RUF046) (#14832)
  • [ruff] Don't emit used-dummy-variable on function parameters (RUF052) (#14818)
  • [ruff] Implement if-key-in-dict-del (RUF051) (#14553)
  • [ruff] Mark autofix for RUF052 as always unsafe (#14824)
  • [ruff] Teach autofix for used-dummy-variable about TypeVars etc. (RUF052) (#14819)

Rule changes

  • [flake8-bugbear] Offer unsafe autofix for no-explicit-stacklevel (B028) (#14829)
  • [flake8-pyi] Skip all type definitions in string-or-bytes-too-long (PYI053) (#14797)
  • [pyupgrade] Do not report when a UTF-8 comment is followed by a non-UTF-8 one (UP009) (#14728)

... (truncated)

Commits
  • 3bb0dac Bump version to 0.8.4 (#15064)
  • 40cba5d [red-knot] Cleanup various todo_type!() messages (#15063)
  • 596d80c [perflint] Parenthesize walrus expressions in autofix for `manual-list-comp...
  • d8b9a36 Disable actionlint hook by default when running pre-commit locally (#15061)
  • 85e71ba [flake8-bandit] Check S105 for annotated assignment (#15059)
  • 2802cbd Don't special-case class instances in unary expression inference (#15045)
  • ed2bce6 [red-knot] Report invalid exceptions (#15042)
  • f0012df Fix typos in RUF043.py (#15044)
  • 0fc4e8f Introduce InferContext (#14956)
  • ac81c72 [ruff] Ambiguous pattern passed to pytest.raises() (RUF043) (#14966)
  • Additional commits viewable in compare view

Updates mypy from 1.13.0 to 1.14.1

Changelog

Sourced from mypy's changelog.

Mypy Release Notes

Next release

Drop Support for Python 3.8

Mypy no longer supports running with Python 3.8, which has reached end-of-life. When running mypy with Python 3.9+, it is still possible to type check code that needs to support Python 3.8 with the --python-version 3.8 argument. Support for this will be dropped in the first half of 2025!

Contributed by Marc Mueller (PR 17492).

Mypyc accelerated mypy wheels for aarch64

Mypy can compile itself to C extension modules using mypyc. This makes mypy 3-5x faster than if mypy is interpreted with pure Python. We now build and upload mypyc accelerated mypy wheels for manylinux_aarch64 to PyPI, making it easy for users on such platforms to realise this speedup.

Contributed by Christian Bundy (PR mypy_mypyc-wheels#76)

--strict-bytes

By default, mypy treats an annotation of bytes as permitting bytearray and memoryview. PEP 688 specified the removal of this special case. Use this flag to disable this behavior. --strict-bytes will be enabled by default in mypy 2.0.

Contributed by Ali Hamdan (PR 18137) and Shantanu Jain (PR 13952).

Improvements to partial type handling in loops

This change results in mypy better modelling control flow within loops and hence detecting several issues it previously did not detect. In some cases, this change may require use of an additional explicit annotation of a variable.

Contributed by Christoph Tyralla (PR 18180).

(Speaking of partial types, another reminder that mypy plans on enabling --local-partial-types by default in mypy 2.0).

Mypy 1.14

We’ve just uploaded mypy 1.14 to the Python Package Index (PyPI). Mypy is a static type checker for Python. This release includes new features and bug fixes. You can install it as follows:

python3 -m pip install -U mypy

... (truncated)

Commits

Updates ipython from 8.18.0 to 8.18.1

Commits

Updates nbsphinx from 0.9.5 to 0.9.6

Release notes

Sourced from nbsphinx's releases.

nbsphinx 0.9.6

https://pypi.org/project/nbsphinx/0.9.6/

  • Markdown: allow lists without leading blank line
Changelog

Sourced from nbsphinx's changelog.

Version 0.9.6 -- 2024-12-24 -- PyPI__ -- diff__

  • Markdown: allow lists without leading blank line

__ https://pypi.org/project/nbsphinx/0.9.6/ __ spatialaudio/nbsphinx@0.9.5...0.9.6

Version 0.9.5 -- 2024-08-13 -- PyPI__ -- diff__

  • Miscellaneous fixes

__ https://pypi.org/project/nbsphinx/0.9.5/ __ spatialaudio/nbsphinx@0.9.4...0.9.5

Version 0.9.4 -- 2024-05-06 -- PyPI__ -- diff__

  • Require docutils >= 0.18.1
  • Minor fixes, documentation and CI updates

__ https://pypi.org/project/nbsphinx/0.9.4/ __ spatialaudio/nbsphinx@0.9.3...0.9.4

Version 0.9.3 -- 2023-08-27 -- PyPI__ -- diff__

  • Fix gallery regression in Sphinx 7.2

__ https://pypi.org/project/nbsphinx/0.9.3/ __ spatialaudio/nbsphinx@0.9.2...0.9.3

Version 0.9.2 -- 2023-05-24 -- PyPI__ -- diff__

  • Improve support for sphinx_immaterial theme
  • Improve support for links starting with #
  • Add support for in-text citations
  • LaTeX: Add support for admonition titles

__ https://pypi.org/project/nbsphinx/0.9.2/ __ spatialaudio/nbsphinx@0.9.1...0.9.2

Version 0.9.1 -- 2023-03-14 -- PyPI__ -- diff__

  • pandoc: disable "smart" option only for version 2.0+

__ https://pypi.org/project/nbsphinx/0.9.1/ __ spatialaudio/nbsphinx@0.9.0...0.9.1

Version 0.9.0 -- 2023-03-12 -- PyPI__ -- diff__

  • Split nbsphinx.py (a Python module) into:

    • nbsphinx/__init__.py (a Python package)
    • A standalone CSS file nbsphinx-code-cells.css_t
    • LaTeX style file nbsphinx.sty
  • Add custom HTML/CSS for thumbnail galleries

    • Separate CSS file nbsphinx-gallery.css

... (truncated)

Commits

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📚 Documentation preview 📚: https://pycytominer--490.org.readthedocs.build/en/490/

Bumps the python-packages group with 7 updates:

| Package | From | To |
| --- | --- | --- |
| [scikit-learn](https://github.com/scikit-learn/scikit-learn) | `1.5.2` | `1.6.0` |
| [boto3](https://github.com/boto/boto3) | `1.35.36` | `1.35.88` |
| [commitizen](https://github.com/commitizen-tools/commitizen) | `4.0.0` | `4.1.0` |
| [ruff](https://github.com/astral-sh/ruff) | `0.8.1` | `0.8.4` |
| [mypy](https://github.com/python/mypy) | `1.13.0` | `1.14.1` |
| [ipython](https://github.com/ipython/ipython) | `8.18.0` | `8.18.1` |
| [nbsphinx](https://github.com/spatialaudio/nbsphinx) | `0.9.5` | `0.9.6` |


Updates `scikit-learn` from 1.5.2 to 1.6.0
- [Release notes](https://github.com/scikit-learn/scikit-learn/releases)
- [Commits](scikit-learn/scikit-learn@1.5.2...1.6.0)

Updates `boto3` from 1.35.36 to 1.35.88
- [Release notes](https://github.com/boto/boto3/releases)
- [Commits](boto/boto3@1.35.36...1.35.88)

Updates `commitizen` from 4.0.0 to 4.1.0
- [Release notes](https://github.com/commitizen-tools/commitizen/releases)
- [Changelog](https://github.com/commitizen-tools/commitizen/blob/master/CHANGELOG.md)
- [Commits](commitizen-tools/commitizen@v4.0.0...v4.1.0)

Updates `ruff` from 0.8.1 to 0.8.4
- [Release notes](https://github.com/astral-sh/ruff/releases)
- [Changelog](https://github.com/astral-sh/ruff/blob/main/CHANGELOG.md)
- [Commits](astral-sh/ruff@0.8.1...0.8.4)

Updates `mypy` from 1.13.0 to 1.14.1
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](python/mypy@v1.13.0...v1.14.1)

Updates `ipython` from 8.18.0 to 8.18.1
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@8.18.0...8.18.1)

Updates `nbsphinx` from 0.9.5 to 0.9.6
- [Release notes](https://github.com/spatialaudio/nbsphinx/releases)
- [Changelog](https://github.com/spatialaudio/nbsphinx/blob/master/NEWS.rst)
- [Commits](spatialaudio/nbsphinx@0.9.5...0.9.6)

---
updated-dependencies:
- dependency-name: scikit-learn
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: boto3
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: commitizen
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: ruff
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: mypy
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: ipython
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: nbsphinx
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
...

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jan 1, 2025
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 94.39%. Comparing base (93ae690) to head (cd85cfc).

Additional details and impacted files
@@           Coverage Diff           @@
##             main     #490   +/-   ##
=======================================
  Coverage   94.39%   94.39%           
=======================================
  Files          57       57           
  Lines        3159     3159           
=======================================
  Hits         2982     2982           
  Misses        177      177           
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unittests 94.39% <ø> (ø)

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@dependabot squash and merge

@dependabot dependabot bot merged commit 4d24bd9 into main Jan 2, 2025
13 checks passed
@dependabot dependabot bot deleted the dependabot/pip/python-packages-9e6eb41981 branch January 2, 2025 15:39
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