Tapscan update (#1388)

* add new updated tapscan files

* update wrapper and test data

tools/tapscan/tapscan.xml

@@ -1,4 +1,4 @@
-<tool id="tapscan_classify" name="TAPScan Classify" version="4.74+galaxy0" profile="23.0">
+<tool id="tapscan_classify" name="TAPScan Classify" version="4.76+galaxy0" profile="23.0">
     <description>Detect Transcription Associated Proteins (TAPs)</description>
     <edam_topics>
         <edam_topic>topic_0121</edam_topic>
@@ -9,28 +9,28 @@
         <requirement type="package" version="4.8">sed</requirement>
     </requirements>
     <required_files>
-        <include type="literal" path="tapscan_script_v74.pl"/>
-        <include type="literal" path="tapscan_domains_v12.txt"/>
-        <include type="literal" path="tapscan_rules_v81.txt"/>
-        <include type="literal" path="tapscan_coverage_values_v10.txt"/>
+        <include type="literal" path="tapscan_classify.pl"/>
+        <include type="literal" path="tapscan_domains_v13.txt.gz"/>
+        <include type="literal" path="tapscan_rules_v82.txt"/>
+        <include type="literal" path="tapscan_coverage_values_v11.txt"/>
     </required_files>
     <command detect_errors="aggressive"><![CDATA[
 
 hmmsearch
   --domtblout domtblout.txt
   --cut_ga
-  '${__tool_directory__}/tapscan_domains_v12.txt.gz'
+  '${__tool_directory__}/tapscan_domains_v13.txt.gz'
   '$protein_fasta_in'
 
 &&
 
-perl '${__tool_directory__}/tapscan_script_v74.pl'
+perl '${__tool_directory__}/tapscan_classify.pl'
   domtblout.txt
-  '${__tool_directory__}/tapscan_rules_v81.txt'
+  '${__tool_directory__}/tapscan_rules_v82.txt'
   '$taps_detected'
   '$taps_family_counts'
   '$taps_detected_extra'
-  '${__tool_directory__}/tapscan_coverage_values_v10.txt'
+  '${__tool_directory__}/tapscan_coverage_values_v11.txt'
 
 &&