Merge pull request #114 from adknowledgeportal/update-workflow-file-a…

…nd-delete-test-value

Update generate-current-manifests.yml

.github/workflows/generate-current-manifests.yml

@@ -38,10 +38,20 @@ jobs:
         working-directory: tests
         run: ./generate_all_templates.sh
 
-      - name: Commit and push changes
-        run: |
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
-          git add --all
-          git commit -m "GitHub Action: generate latest manifests" || echo "No changes to commit"
-          git push
+      - name: Create Pull Request
+        uses: peter-evans/create-pull-request@v5
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          commit-message: "GitHub Action: generate latest manifests"
+          title: "Update manifests"
+          body: |
+            This PR updates the manifests based on the latest changes.
+            Please review and merge if everything looks correct.
+          branch: update-manifests
+          base: main
+          labels: |
+            automated pr
+            manifest update
+          reviewers: $$ {github.actor }}
+          draft: false
+          delete-branch: true

AD.model.csv

@@ -984,7 +984,7 @@ specimenIdSource,"The repository or database to which a specimenID maps; or, the
 spectrometerFrequency,The frequency at which a spectrometer causes hydrogen atoms to resonate (in MHz).,,,,False,ManifestColumn,,sage.annotations-experimentalData.spectrometerFrequency-0.0.2,,number,mass spectrometry
 stockNumber,Official JAX Mouse stock number,,,,False,ManifestColumn,,sage.annotations-neuro.stockNumber-0.0.1,,string,MODEL-AD
 strainOfficialNamefficialName,Official JAX Mouse strain nomenclature,,,,False,ManifestColumn,,sage.annotations-neuro.officialName-0.0.1,,string,MODEL-AD
-study,Study,"3Dchromatin, ABC-DS, Abeta_microglia, ACOM, ACT, AD_ADRD_Exposome, AD-BXD, ADAMTS7, ADAtlas_Archive, ADMC_ADNI_BakerLipidomics, ADMC_ADNI_Biocrates_MxP_Q500, ADMC_ADNI_NightingaleNMR, ADMC_ADNI_UHawaiiGutMetabolites, ADMC_ADNI1, ADMC_ADNI2-GO, ADMC_UPenn, Aging-PheWAS, AMP-AD_DiverseCohorts, APOE-TR, APOE4_Myelination, APOEPSC, Banner, BCM-DMAS, BipSeq, BLSA, BPSD_AD_AnimalStudy_NU, BrainGVEX, BroadAstrom109, BroadiPSC, BroadMDMi, CHDWB, CMC, CMC_HBCC, CMC-PEC, CNON, DELETEME, DiCAD, diseasePseudotime, DukeAD_PTSD, ELPSCRNA, Emory_ADRC, EmoryDrosophilaTau, EpiGABA, EpiMap, eQTLmetaAnalysis, FreshMicro, HBI_scRNAseq, HBTRC, HDAC1-cKOBrain, HumanFC, IL10_APPmouse, iNiAstshRNA, IntegrativePathwayAnalysis, iPSC, iPSC-HiC, iPSCAstrocytes, iPSCMicroglia, Jax.IU.Pitt_APOE4.Trem2.R47H, Jax.IU.Pitt_APP.PS1, Jax.IU.Pitt_Levetiracetam-5XFAD, Jax.IU.Pitt_LOAD2.PrimaryScreen, Jax.IU.Pitt_MicrobiomePilot, Jax.IU.Pitt_PrimaryScreen, Jax.IU.Pitt_StrainValidation, Jax.IU.Pitt_Verubecestat_5XFAD, Jax.IU.Pitt.Proteomics_Metabolomics_Pilot, LBP, LillyMicroglia, LLFS, lncRNA Pilot, MARS WISCONSIN, MayoeGWAS, MayoHippocampus, MayoLOADGWAS, MayoPilotRNAseq, MayoRNAseq, MC_snRNA, MC-BrAD, MC-CAA, MCMPS, MEF2_Resilience, MindPhenomeKB, miR155, MIT_ROSMAP_Multiomics, MOA-PAD, MODEL-AD_5XFAD, MODEL-AD_Abca7_APOE4_Trem2, MODEL-AD_APOE4_KI, MODEL-AD_APOE4_Trem2, MODEL-AD_Ceacam_KO_APOE4_Trem2, MODEL-AD_hAbeta_KI, MODEL-AD_Harmonization, MODEL-AD_hCR1_KI_on_APOE4_Trem2, MODEL-AD_hTau_Trem2, MODEL-AD_Il1rapKO_APOE4_Trem2_exon2KO, MODEL-AD_Mthfr_APOE4_Trem2, MODEL-AD_Rat_F344, MODEL-AD_Trem2_R47H, MouseHAL, MRGWAS, MSBB, MSBB_ArrayTissuePanel, MSDM, MSMM, MSSMiPSC, mtDNA_AD, NAPS, NHP-Chimpanzee, NHP-Macaque, NPS-AD, OFMM, omicsADDS, Organoid_scRNAseq, Plxnb1_KO, RADEL, RNAseq_Harmonization, rnaSeqReprocessing, rnaSeqSampleSwap, ROSMAP, ROSMAP_bsSeq, ROSMAP_CellTypeSpecificHA, ROSMAP_CognitiveResilience, ROSMAP_Lipidomics_Emory, ROSMAP_MammillaryBody, ROSMAP_nucleus_hashing, ROSMAP-IA, ROSMAP-IN, RR_APOE4, scRNAseq_microglia_wild_ADmice, SEA-AD, SMIB-AD, snRNAseqAD_TREM2, StJude_BannerSun, SUNYStrokeModel, SuperAgerEpiMap, SV_xQTL, SWS, SY5Y_Emory, SY5Y_REST, TASTPM, TAUAPPms, TauD35, Trisomy21iN, TS-RNAseq, TWAS, TyrobpKO, TyrobpKO_AppPs1, U1-70_PrimaryCellCulture, UAB_ADRC, UCI_3xTg-AD, UCI_ABCA7, UCI_Apoe-Ch, UCI_BIN1, UCI_CCLines, UCI_Microbiome, UCI_Multiomics, UCI_PrimaryScreen, UCI_StrainValidation, UCI_Trem2_Cuprizone, UCI_Trem2-R47H_NSS, UCLA-ASD, UCSF_MAC, UFLOR_ABI3_GNGT2, UPenn, VirusResilience_Banner, VirusResilience_iPSC, VirusResilience_LCL, VirusResilience_Mayo.MSBB.ROSMAP, VMC, WallOfTargets, WGBS Pilot, WGS_Harmonization, Yale-ASD",,,True,ManifestColumn,,sage.annotations-neuro.study-0.0.57,,string,ADKP
+study,Study,"3Dchromatin, ABC-DS, Abeta_microglia, ACOM, ACT, AD_ADRD_Exposome, AD-BXD, ADAMTS7, ADAtlas_Archive, ADMC_ADNI_BakerLipidomics, ADMC_ADNI_Biocrates_MxP_Q500, ADMC_ADNI_NightingaleNMR, ADMC_ADNI_UHawaiiGutMetabolites, ADMC_ADNI1, ADMC_ADNI2-GO, ADMC_UPenn, Aging-PheWAS, AMP-AD_DiverseCohorts, APOE-TR, APOE4_Myelination, APOEPSC, Banner, BCM-DMAS, BipSeq, BLSA, BPSD_AD_AnimalStudy_NU, BrainGVEX, BroadAstrom109, BroadiPSC, BroadMDMi, CHDWB, CMC, CMC_HBCC, CMC-PEC, CNON, DiCAD, diseasePseudotime, DukeAD_PTSD, ELPSCRNA, Emory_ADRC, EmoryDrosophilaTau, EpiGABA, EpiMap, eQTLmetaAnalysis, FreshMicro, HBI_scRNAseq, HBTRC, HDAC1-cKOBrain, HumanFC, IL10_APPmouse, iNiAstshRNA, IntegrativePathwayAnalysis, iPSC, iPSC-HiC, iPSCAstrocytes, iPSCMicroglia, Jax.IU.Pitt_APOE4.Trem2.R47H, Jax.IU.Pitt_APP.PS1, Jax.IU.Pitt_Levetiracetam-5XFAD, Jax.IU.Pitt_LOAD2.PrimaryScreen, Jax.IU.Pitt_MicrobiomePilot, Jax.IU.Pitt_PrimaryScreen, Jax.IU.Pitt_StrainValidation, Jax.IU.Pitt_Verubecestat_5XFAD, Jax.IU.Pitt.Proteomics_Metabolomics_Pilot, LBP, LillyMicroglia, LLFS, lncRNA Pilot, MARS WISCONSIN, MayoeGWAS, MayoHippocampus, MayoLOADGWAS, MayoPilotRNAseq, MayoRNAseq, MC_snRNA, MC-BrAD, MC-CAA, MCMPS, MEF2_Resilience, MindPhenomeKB, miR155, MIT_ROSMAP_Multiomics, MOA-PAD, MODEL-AD_5XFAD, MODEL-AD_Abca7_APOE4_Trem2, MODEL-AD_APOE4_KI, MODEL-AD_APOE4_Trem2, MODEL-AD_Ceacam_KO_APOE4_Trem2, MODEL-AD_hAbeta_KI, MODEL-AD_Harmonization, MODEL-AD_hCR1_KI_on_APOE4_Trem2, MODEL-AD_hTau_Trem2, MODEL-AD_Il1rapKO_APOE4_Trem2_exon2KO, MODEL-AD_Mthfr_APOE4_Trem2, MODEL-AD_Rat_F344, MODEL-AD_Trem2_R47H, MouseHAL, MRGWAS, MSBB, MSBB_ArrayTissuePanel, MSDM, MSMM, MSSMiPSC, mtDNA_AD, NAPS, NHP-Chimpanzee, NHP-Macaque, NPS-AD, OFMM, omicsADDS, Organoid_scRNAseq, Plxnb1_KO, RADEL, RNAseq_Harmonization, rnaSeqReprocessing, rnaSeqSampleSwap, ROSMAP, ROSMAP_bsSeq, ROSMAP_CellTypeSpecificHA, ROSMAP_CognitiveResilience, ROSMAP_Lipidomics_Emory, ROSMAP_MammillaryBody, ROSMAP_nucleus_hashing, ROSMAP-IA, ROSMAP-IN, RR_APOE4, scRNAseq_microglia_wild_ADmice, SEA-AD, SMIB-AD, snRNAseqAD_TREM2, StJude_BannerSun, SUNYStrokeModel, SuperAgerEpiMap, SV_xQTL, SWS, SY5Y_Emory, SY5Y_REST, TASTPM, TAUAPPms, TauD35, Trisomy21iN, TS-RNAseq, TWAS, TyrobpKO, TyrobpKO_AppPs1, U1-70_PrimaryCellCulture, UAB_ADRC, UCI_3xTg-AD, UCI_ABCA7, UCI_Apoe-Ch, UCI_BIN1, UCI_CCLines, UCI_Microbiome, UCI_Multiomics, UCI_PrimaryScreen, UCI_StrainValidation, UCI_Trem2_Cuprizone, UCI_Trem2-R47H_NSS, UCLA-ASD, UCSF_MAC, UFLOR_ABI3_GNGT2, UPenn, VirusResilience_Banner, VirusResilience_iPSC, VirusResilience_LCL, VirusResilience_Mayo.MSBB.ROSMAP, VMC, WallOfTargets, WGBS Pilot, WGS_Harmonization, Yale-ASD",,,True,ManifestColumn,,sage.annotations-neuro.study-0.0.57,,string,ADKP
 TDP43,TDP Whole Brain (dichotomous). Calculated using the categories in TDP_3 - if any of the amygdala hippocampus entorhinal or neocortex are positive it is yes. If assessed and negative for the above it is no,"No, Yes, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP43-0.0.2,,string,clinical
 TDP_3,TDP-3 Component,"No TDP_3, Amygdala, Hippocampus or Etorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_3-0.0.2,string,,clinical
 TDP_5,TDP Stage; Assumes that TDP progresses from brainstem>amygdala>hippocampus>inferior temporal cortex>neocortex,"No TDP_5, Brainstem/Spinal Cord, Amygdala, Hippocampus, Entorhinal, Neocortex, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.TDP_5-0.0.2,string,,clinical
@@ -1376,7 +1376,6 @@ CMC,CommonMind Consortium,,,,,study,,https://www.synapse.org/#!Synapse:syn275979
 CMC-PEC,Data from the CMC cohorts funded through PsychENCODE grants,,,,,study,,https://www.synapse.org/#!Synapse:syn21961394,,string,ADKP
 CMC_HBCC,The CommonMind Consortium Human Brain Collection Core Cohort,,,,,study,,,,string,ADKP
 CNON,Cultured Neuronal cells derived from Olfactory Neuroepithelium,,,,,study,,https://www.synapse.org/#!Synapse:syn4590897,,string,ADKP
-DELETEME," ""DELETEME""",,,,,study,,https://www.deleteme.edu,,string,ADKP
 DiCAD,"Interdisciplinary Research to Understand the Interplay of Diabetes, Cerebrovascular disease and Alzheimer's disease",,,,,study,,https://www.synapse.org/#!Synapse:syn9944859,,string,ADKP
 diseasePseudotime,The diseasePseudotime study,,,,,study,,https://www.synapse.org/#!Synapse:syn22822673,,string,ADKP
 DukeAD_PTSD,"The Duke Study of Shared Genetic, Epigenetic, and Transcriptomic Profiles Between AD and PTSD study",,,,,study,,https://www.synapse.org/#!Synapse:syn23585917,,string,ADKP

AD.model.jsonld

@@ -8435,9 +8435,6 @@
                 {
                     "@id": "bts:CNON"
                 },
-                {
-                    "@id": "bts:DELETEME"
-                },
                 {
                     "@id": "bts:DiCAD"
                 },
@@ -26158,23 +26155,6 @@
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
-        {
-            "@id": "bts:DELETEME",
-            "@type": "rdfs:Class",
-            "rdfs:comment": "\"DELETEME\"",
-            "rdfs:label": "DELETEME",
-            "rdfs:subClassOf": [
-                {
-                    "@id": "bts:Study"
-                }
-            ],
-            "schema:isPartOf": {
-                "@id": "http://schema.biothings.io"
-            },
-            "sms:displayName": "DELETEME",
-            "sms:required": "sms:false",
-            "sms:validationRules": []
-        },
         {
             "@id": "bts:DiseasePseudotime",
             "@type": "rdfs:Class",

README.md

@@ -80,7 +80,8 @@ When you open a PR that includes any changes to files in the `modules/` director
 1. Runs the `assemble_csv_data_model.py` script to concatenate the modular attribute csvs into one data frame, sort alphabetically by `Parent` and then `Attribute`, and write the combined dataframe to `AD.model.csv`. The action then commits the changes to the master data model csv.
 2. Installs the latest version of `schematic` from PyPi and runs `schema convert` on the newly-concatenated data model csv to generate a new version of the jsonld file `AD.model.jsonld`. The action also commits the changes to the jsonld.
 3. Collects the names of any module attributes or templates changed by your PR, then uses the schematic CLI to generate Google sheet versions of those templates.
-4. Makes a new comment in the PR consisting of an Rmd report with the template generation status and link to each template, so you can physically view the new template and verify that any changes you made look as intended.  
+4. Makes a new comment in the PR consisting of an Rmd report with the template generation status and link to each template, so you can physically view the new template and verify that any changes you made look as intended.
+5. Due to branch protection rules set on the `main` branch, a branch called `update-manifests` containing the updated manifests is created, and a PR is automatically generated for a member of the repo to review and manually merge afterwards.
 
 If this automated workflow fails, then the data model may be invalid and further investigation is needed. 
 

modules/ADKP/study.csv

@@ -1,5 +1,5 @@
 Attribute,Description,Valid Values,DependsOn,Properties,Required,Parent,DependsOn Component,Source,Validation Rules,columnType,module
-study,Study,"3Dchromatin, ABC-DS, Abeta_microglia, ACOM, ACT, AD_ADRD_Exposome, AD-BXD, ADAMTS7, ADAtlas_Archive, ADMC_ADNI_BakerLipidomics, ADMC_ADNI_Biocrates_MxP_Q500, ADMC_ADNI_NightingaleNMR, ADMC_ADNI_UHawaiiGutMetabolites, ADMC_ADNI1, ADMC_ADNI2-GO, ADMC_UPenn, Aging-PheWAS, AMP-AD_DiverseCohorts, APOE-TR, APOE4_Myelination, APOEPSC, Banner, BCM-DMAS, BipSeq, BLSA, BPSD_AD_AnimalStudy_NU, BrainGVEX, BroadAstrom109, BroadiPSC, BroadMDMi, CHDWB, CMC, CMC_HBCC, CMC-PEC, CNON, DELETEME, DiCAD, diseasePseudotime, DukeAD_PTSD, ELPSCRNA, Emory_ADRC, EmoryDrosophilaTau, EpiGABA, EpiMap, eQTLmetaAnalysis, FreshMicro, HBI_scRNAseq, HBTRC, HDAC1-cKOBrain, HumanFC, IL10_APPmouse, iNiAstshRNA, IntegrativePathwayAnalysis, iPSC, iPSC-HiC, iPSCAstrocytes, iPSCMicroglia, Jax.IU.Pitt_APOE4.Trem2.R47H, Jax.IU.Pitt_APP.PS1, Jax.IU.Pitt_Levetiracetam-5XFAD, Jax.IU.Pitt_LOAD2.PrimaryScreen, Jax.IU.Pitt_MicrobiomePilot, Jax.IU.Pitt_PrimaryScreen, Jax.IU.Pitt_StrainValidation, Jax.IU.Pitt_Verubecestat_5XFAD, Jax.IU.Pitt.Proteomics_Metabolomics_Pilot, LBP, LillyMicroglia, LLFS, lncRNA Pilot, MARS WISCONSIN, MayoeGWAS, MayoHippocampus, MayoLOADGWAS, MayoPilotRNAseq, MayoRNAseq, MC_snRNA, MC-BrAD, MC-CAA, MCMPS, MEF2_Resilience, MindPhenomeKB, miR155, MIT_ROSMAP_Multiomics, MOA-PAD, MODEL-AD_5XFAD, MODEL-AD_Abca7_APOE4_Trem2, MODEL-AD_APOE4_KI, MODEL-AD_APOE4_Trem2, MODEL-AD_Ceacam_KO_APOE4_Trem2, MODEL-AD_hAbeta_KI, MODEL-AD_Harmonization, MODEL-AD_hCR1_KI_on_APOE4_Trem2, MODEL-AD_hTau_Trem2, MODEL-AD_Il1rapKO_APOE4_Trem2_exon2KO, MODEL-AD_Mthfr_APOE4_Trem2, MODEL-AD_Rat_F344, MODEL-AD_Trem2_R47H, MouseHAL, MRGWAS, MSBB, MSBB_ArrayTissuePanel, MSDM, MSMM, MSSMiPSC, mtDNA_AD, NAPS, NHP-Chimpanzee, NHP-Macaque, NPS-AD, OFMM, omicsADDS, Organoid_scRNAseq, Plxnb1_KO, RADEL, RNAseq_Harmonization, rnaSeqReprocessing, rnaSeqSampleSwap, ROSMAP, ROSMAP_bsSeq, ROSMAP_CellTypeSpecificHA, ROSMAP_CognitiveResilience, ROSMAP_Lipidomics_Emory, ROSMAP_MammillaryBody, ROSMAP_nucleus_hashing, ROSMAP-IA, ROSMAP-IN, RR_APOE4, scRNAseq_microglia_wild_ADmice, SEA-AD, SMIB-AD, snRNAseqAD_TREM2, StJude_BannerSun, SUNYStrokeModel, SuperAgerEpiMap, SV_xQTL, SWS, SY5Y_Emory, SY5Y_REST, TASTPM, TAUAPPms, TauD35, Trisomy21iN, TS-RNAseq, TWAS, TyrobpKO, TyrobpKO_AppPs1, U1-70_PrimaryCellCulture, UAB_ADRC, UCI_3xTg-AD, UCI_ABCA7, UCI_Apoe-Ch, UCI_BIN1, UCI_CCLines, UCI_Microbiome, UCI_Multiomics, UCI_PrimaryScreen, UCI_StrainValidation, UCI_Trem2_Cuprizone, UCI_Trem2-R47H_NSS, UCLA-ASD, UCSF_MAC, UFLOR_ABI3_GNGT2, UPenn, VirusResilience_Banner, VirusResilience_iPSC, VirusResilience_LCL, VirusResilience_Mayo.MSBB.ROSMAP, VMC, WallOfTargets, WGBS Pilot, WGS_Harmonization, Yale-ASD",,,TRUE,ManifestColumn,,sage.annotations-neuro.study-0.0.57,,string,ADKP
+study,Study,"3Dchromatin, ABC-DS, Abeta_microglia, ACOM, ACT, AD_ADRD_Exposome, AD-BXD, ADAMTS7, ADAtlas_Archive, ADMC_ADNI_BakerLipidomics, ADMC_ADNI_Biocrates_MxP_Q500, ADMC_ADNI_NightingaleNMR, ADMC_ADNI_UHawaiiGutMetabolites, ADMC_ADNI1, ADMC_ADNI2-GO, ADMC_UPenn, Aging-PheWAS, AMP-AD_DiverseCohorts, APOE-TR, APOE4_Myelination, APOEPSC, Banner, BCM-DMAS, BipSeq, BLSA, BPSD_AD_AnimalStudy_NU, BrainGVEX, BroadAstrom109, BroadiPSC, BroadMDMi, CHDWB, CMC, CMC_HBCC, CMC-PEC, CNON, DiCAD, diseasePseudotime, DukeAD_PTSD, ELPSCRNA, Emory_ADRC, EmoryDrosophilaTau, EpiGABA, EpiMap, eQTLmetaAnalysis, FreshMicro, HBI_scRNAseq, HBTRC, HDAC1-cKOBrain, HumanFC, IL10_APPmouse, iNiAstshRNA, IntegrativePathwayAnalysis, iPSC, iPSC-HiC, iPSCAstrocytes, iPSCMicroglia, Jax.IU.Pitt_APOE4.Trem2.R47H, Jax.IU.Pitt_APP.PS1, Jax.IU.Pitt_Levetiracetam-5XFAD, Jax.IU.Pitt_LOAD2.PrimaryScreen, Jax.IU.Pitt_MicrobiomePilot, Jax.IU.Pitt_PrimaryScreen, Jax.IU.Pitt_StrainValidation, Jax.IU.Pitt_Verubecestat_5XFAD, Jax.IU.Pitt.Proteomics_Metabolomics_Pilot, LBP, LillyMicroglia, LLFS, lncRNA Pilot, MARS WISCONSIN, MayoeGWAS, MayoHippocampus, MayoLOADGWAS, MayoPilotRNAseq, MayoRNAseq, MC_snRNA, MC-BrAD, MC-CAA, MCMPS, MEF2_Resilience, MindPhenomeKB, miR155, MIT_ROSMAP_Multiomics, MOA-PAD, MODEL-AD_5XFAD, MODEL-AD_Abca7_APOE4_Trem2, MODEL-AD_APOE4_KI, MODEL-AD_APOE4_Trem2, MODEL-AD_Ceacam_KO_APOE4_Trem2, MODEL-AD_hAbeta_KI, MODEL-AD_Harmonization, MODEL-AD_hCR1_KI_on_APOE4_Trem2, MODEL-AD_hTau_Trem2, MODEL-AD_Il1rapKO_APOE4_Trem2_exon2KO, MODEL-AD_Mthfr_APOE4_Trem2, MODEL-AD_Rat_F344, MODEL-AD_Trem2_R47H, MouseHAL, MRGWAS, MSBB, MSBB_ArrayTissuePanel, MSDM, MSMM, MSSMiPSC, mtDNA_AD, NAPS, NHP-Chimpanzee, NHP-Macaque, NPS-AD, OFMM, omicsADDS, Organoid_scRNAseq, Plxnb1_KO, RADEL, RNAseq_Harmonization, rnaSeqReprocessing, rnaSeqSampleSwap, ROSMAP, ROSMAP_bsSeq, ROSMAP_CellTypeSpecificHA, ROSMAP_CognitiveResilience, ROSMAP_Lipidomics_Emory, ROSMAP_MammillaryBody, ROSMAP_nucleus_hashing, ROSMAP-IA, ROSMAP-IN, RR_APOE4, scRNAseq_microglia_wild_ADmice, SEA-AD, SMIB-AD, snRNAseqAD_TREM2, StJude_BannerSun, SUNYStrokeModel, SuperAgerEpiMap, SV_xQTL, SWS, SY5Y_Emory, SY5Y_REST, TASTPM, TAUAPPms, TauD35, Trisomy21iN, TS-RNAseq, TWAS, TyrobpKO, TyrobpKO_AppPs1, U1-70_PrimaryCellCulture, UAB_ADRC, UCI_3xTg-AD, UCI_ABCA7, UCI_Apoe-Ch, UCI_BIN1, UCI_CCLines, UCI_Microbiome, UCI_Multiomics, UCI_PrimaryScreen, UCI_StrainValidation, UCI_Trem2_Cuprizone, UCI_Trem2-R47H_NSS, UCLA-ASD, UCSF_MAC, UFLOR_ABI3_GNGT2, UPenn, VirusResilience_Banner, VirusResilience_iPSC, VirusResilience_LCL, VirusResilience_Mayo.MSBB.ROSMAP, VMC, WallOfTargets, WGBS Pilot, WGS_Harmonization, Yale-ASD",,,TRUE,ManifestColumn,,sage.annotations-neuro.study-0.0.57,,string,ADKP
 3Dchromatin,The neuronal and glial 3D chromatin architecture study,,,,,study,,https://www.synapse.org/#!Synapse:syn21754060,,string,ADKP
 ABC-DS,The Alzheimer's Biomarkers Consortium - Down Syndrome (ABC-DS) Study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage?Study=syn38190930,,string,ADKP
 Abeta_microglia,The differential transcriptomic responses of microglia to Ab peptide aggregates (Abeta_microglia) study,,,,,study,,https://adknowledgeportal.synapse.org/Explore/Studies/DetailsPage?Study=syn24828089,,string,ADKP
@@ -37,7 +37,6 @@ CMC,CommonMind Consortium,,,,,study,,https://www.synapse.org/#!Synapse:syn275979
 CMC_HBCC,The CommonMind Consortium Human Brain Collection Core Cohort,,,,,study,,,,string,ADKP
 CMC-PEC,Data from the CMC cohorts funded through PsychENCODE grants,,,,,study,,https://www.synapse.org/#!Synapse:syn21961394,,string,ADKP
 CNON,Cultured Neuronal cells derived from Olfactory Neuroepithelium,,,,,study,,https://www.synapse.org/#!Synapse:syn4590897,,string,ADKP
-DELETEME, "DELETEME",,,,,study,,https://www.deleteme.edu,,string,ADKP
 DiCAD,"Interdisciplinary Research to Understand the Interplay of Diabetes, Cerebrovascular disease and Alzheimer's disease",,,,,study,,https://www.synapse.org/#!Synapse:syn9944859,,string,ADKP
 diseasePseudotime,The diseasePseudotime study,,,,,study,,https://www.synapse.org/#!Synapse:syn22822673,,string,ADKP
 DukeAD_PTSD,"The Duke Study of Shared Genetic, Epigenetic, and Transcriptomic Profiles Between AD and PTSD study",,,,,study,,https://www.synapse.org/#!Synapse:syn23585917,,string,ADKP