Merge pull request #130 from adknowledgeportal/add-agmp-to-consortium…

…-csv Add "AGMP" to consortium.csv
adknowledgeportal · Dec 3, 2024 · 6a0b12f · 6a0b12f
2 parents cfc5876 + 5578672
commit 6a0b12f
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Showing 3 changed files with 28 additions and 6 deletions.
diff --git a/AD.model.csv b/AD.model.csv
@@ -475,6 +475,7 @@ fixed tissues only,Conservation method is fixed tissues only,,,,,conservationMet
 frozen tissue only,Conservation method is frozen tissue only,,,,,conservationMethod,,CLEAR-AD,,string,clinical
 missing or unknown,Conservation method is missing or unknown,,,,,conservationMethod,,CLEAR-AD,,string,clinical
 noConservation,No conservation method,,,,,conservationMethod,,CLEAR-AD,,string,clinical
+AGMP,Alzheimer Gut Microbiome Project,,,,,consortium,,https://alzheimergut.org/,,string,ADKP 
 AMP-AD,Accelerating Medicines Partnership-Alzheimer's Disease,,,,,consortium,,https://adknowledgeportal.synapse.org/,,string,ADKP
 BSMN,Brain Somatic Mosaicism Network,,,,,consortium,,https://www.synapse.org/bsmn,,string,ADKP
 CDCP,Community Data Contribution Program,,,,,consortium,,https://adknowledgeportal.synapse.org/,,string,ADKP
@@ -863,7 +864,7 @@ chromosome,A structure composed of a very long molecule of DNA and associated pr
 climbID,Identifying string linked to an animal in Climb database,,,,True,ManifestColumn,,sage.annotations-neuro.climbID-0.0.1,,string,MODEL-AD
 cohort,A study group population where the members are human beings who meet inclusion criteria.,"ABC-DS,ACT,ADNI,ADRC,Banner,BEAM,BEB-Miller,Biggs Institute Brain Bank,BLSA,CHDWB,CLINCOR,Columbia ADRC,DiCAD,EFIGA,EHBS,Emory ADRC,FBS,Framingham,HBCC,HBTRC,HPGP,HUP,LBP,MARS,MARS-WI,Mayo Clinic,MC,MCJ,MCR,MIND,MSBB,NYBB,Pitt ADRC,POINTER,RADC,ROSMAP,SMRI,Tulsa LIBR-1000,UFL,UK Biobank,UPBB,UPenn,UW ADRC,WHICAP",,,False,ManifestColumn,,http://purl.obolibrary.org/obo/STATO_0000203,,string,clinical
 conservationMethod,The conservation method,"noConservation, fixed tissues only, frozen tissue only, both fixed and frozen tissue, missing or unknown",,,True,ManifestColumn,,sage-annotations-clinical.conservationMethod-0.0.2,string,,clinical
-consortium,The name of the consortium,"CMC, PEC, AMP-AD, MODEL-AD, M2OVE-AD, Resilience-AD, BSMN, CSBC, PSON, GENIE, Synodos, DHART SPORE, CDCP, Psych-AD, ELITE, Not Applicable",,,True,ManifestColumn,,sage.annotations-sageCommunity.consortium-0.0.5,,string,ADKP
+consortium,The name of the consortium,"CMC, PEC, AGMP, AMP-AD, MODEL-AD, M2OVE-AD, Resilience-AD, BSMN, CSBC, PSON, GENIE, Synodos, DHART SPORE, CDCP, Psych-AD, ELITE, Not Applicable",,,True,ManifestColumn,,sage.annotations-sageCommunity.consortium-0.0.5,,string,ADKP
 contrastAgent,Substance administered during an imaging procedure that allows delineation of internal structures.,,,,False,ManifestColumn,,sage.annotations-experimentalData.contrastAgent-0.0.2,,string,imaging
 controlType,Control samples suitable for normalization and batch correction,"AIBL pool, Baker pool, blank injection, GIS, GoldenWest, NIST SRM 1950, qc mix, Replicate, study pool, water plus Baker ISTD",,,False,ManifestColumn,,sage.annotations-experimentalData.controlType-0.0.5,,string,experimentalData
 CVD_ART,Arteriolosclerosis,"No CVD_ART, Mild, Moderate, Severe, missing or unknown",,,False,ManifestColumn,,sage-annotations-clinical.CVD_ART-0.0.2,string,,clinical

diff --git a/AD.model.jsonld b/AD.model.jsonld
@@ -11217,10 +11217,10 @@
             "sms:validationRules": []
         },
         {
-            "@id": "bts:AMP-AD",
+            "@id": "bts:AGMP",
             "@type": "rdfs:Class",
-            "rdfs:comment": "Accelerating Medicines Partnership-Alzheimer's Disease",
-            "rdfs:label": "AMP-AD",
+            "rdfs:comment": "Alzheimer Gut Microbiome Project",
+            "rdfs:label": "AGMP",
             "rdfs:subClassOf": [
                 {
                     "@id": "bts:Consortium"
@@ -11229,7 +11229,7 @@
             "schema:isPartOf": {
                 "@id": "http://schema.biothings.io"
             },
-            "sms:displayName": "AMP-AD",
+            "sms:displayName": "AGMP",
             "sms:required": "sms:false",
             "sms:validationRules": []
         },
@@ -11253,6 +11253,9 @@
                 {
                     "@id": "bts:PEC"
                 },
+                {
+                    "@id": "bts:AGMP"
+                },
                 {
                     "@id": "bts:AMP-AD"
                 },
@@ -11300,6 +11303,23 @@
             "sms:required": "sms:true",
             "sms:validationRules": []
         },
+        {
+            "@id": "bts:AMP-AD",
+            "@type": "rdfs:Class",
+            "rdfs:comment": "Accelerating Medicines Partnership-Alzheimer's Disease",
+            "rdfs:label": "AMP-AD",
+            "rdfs:subClassOf": [
+                {
+                    "@id": "bts:Consortium"
+                }
+            ],
+            "schema:isPartOf": {
+                "@id": "http://schema.biothings.io"
+            },
+            "sms:displayName": "AMP-AD",
+            "sms:required": "sms:false",
+            "sms:validationRules": []
+        },
         {
             "@id": "bts:BSMN",
             "@type": "rdfs:Class",

diff --git a/modules/ADKP/consortium.csv b/modules/ADKP/consortium.csv
@@ -1,5 +1,6 @@
 Attribute,Description,Valid Values,DependsOn,Properties,Required,Parent,DependsOn Component,Source,Validation Rules,columnType,module
-consortium,The name of the consortium,"CMC, PEC, AMP-AD, MODEL-AD, M2OVE-AD, Resilience-AD, BSMN, CSBC, PSON, GENIE, Synodos, DHART SPORE, CDCP, Psych-AD, ELITE, Not Applicable",,,True,ManifestColumn,,sage.annotations-sageCommunity.consortium-0.0.5,,string,ADKP
+consortium,The name of the consortium,"CMC, PEC, AGMP, AMP-AD, MODEL-AD, M2OVE-AD, Resilience-AD, BSMN, CSBC, PSON, GENIE, Synodos, DHART SPORE, CDCP, Psych-AD, ELITE, Not Applicable",,,True,ManifestColumn,,sage.annotations-sageCommunity.consortium-0.0.5,,string,ADKP
+AGMP,Alzheimer Gut Microbiome Project,,,,,consortium,,https://alzheimergut.org/,,string,ADKP 
 AMP-AD,Accelerating Medicines Partnership-Alzheimer's Disease,,,,,consortium,,https://adknowledgeportal.synapse.org/,,string,ADKP
 BSMN,Brain Somatic Mosaicism Network,,,,,consortium,,https://www.synapse.org/bsmn,,string,ADKP
 CDCP,Community Data Contribution Program,,,,,consortium,,https://adknowledgeportal.synapse.org/,,string,ADKP