[Porting] Major Sync for Clustering#351

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HaiwangYu wants to merge 302 commits intomasterfrom apply-pointcloud

+29,020-3,123

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Commits on Jun 18, 2024

add quickhull dep.
HaiwangYu
committed

Commits on Jun 20, 2024

Commits on Jun 21, 2024

all tests pass, print_dds does not work with int
HaiwangYu
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Fix JSON to string formatting to include 'pretty' and control over number of significant figures
brettviren
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Add general support for dumping to Bee zip archives and get UbooneBlobSource initially working
brettviren
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Merge branch 'apply-pointcloud' of github.com:wirecell/wire-cell-toolkit into apply-pointcloud
brettviren
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Fix uninitialized variables
brettviren
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Make intermediate directory entries in zip file to make Bee happy and adjust to new clus sub-package
brettviren
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Comment out the hack to make intermediate directories
brettviren
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Actually apply the speed and time offset settings.
brettviren
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Merge branch 'apply-pointcloud' of github.com:WireCell/wire-cell-toolkit into apply-pointcloud
HaiwangYu
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Add a descendants count
brettviren
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Account for the non-existence of local PCs.
brettviren
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Merge branch 'apply-pointcloud' of github.com:wirecell/wire-cell-toolkit into apply-pointcloud
brettviren
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Commits on Jun 22, 2024

Commits on Jun 24, 2024

Commits on Jun 25, 2024

Commits on Jun 26, 2024

Merge branch 'apply-pointcloud' of github.com:WireCell/wire-cell-toolkit into apply-pointcloud
lastgeorge
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Commits on Jun 27, 2024

dead outer corners
HaiwangYu
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Commits on Jun 28, 2024

Commits on Jun 30, 2024

Commits on Jul 1, 2024

Commits on Jul 2, 2024

Commits on Jul 14, 2024

pca, quickhull, JudgeSeparateDec_1
HaiwangYu
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Commits on Jul 16, 2024

Commits on Jul 30, 2024

Commits on Aug 1, 2024

init Separate_2
HaiwangYu
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Commits on Aug 2, 2024

Commits on Aug 5, 2024

Commits on Aug 6, 2024

Commits on Aug 21, 2024

init get_2d_points_info
HaiwangYu
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Commits on Aug 27, 2024

add additional radius cut
HaiwangYu
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Commits on Aug 28, 2024

Commits on Sep 17, 2024

deghost compiles
HaiwangYu
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Commits on Oct 7, 2024

still debug deghosting, examine x running.
HaiwangYu
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Commits on Oct 8, 2024

protect_overclustering implemented
HaiwangYu
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Commits on Oct 11, 2024

clean up
HaiwangYu
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Commits on Oct 15, 2024

Commits on Oct 17, 2024

clustering_isolated compiles
HaiwangYu
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Commits on Oct 25, 2024

add an MD
Xin Qian
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modify a file
Xin Qian
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modify a file
Xin Qian
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modify a file
Xin Qian
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move the definition of JudgeSpearateDec_2 to the header file
Xin Qian
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add a md file
Xin Qian
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Commits on Oct 26, 2024

Commits on Oct 27, 2024

add a md file
Xin Qian
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add an md file
Xin Qian
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Commits on Oct 28, 2024

Commits on Nov 4, 2024

Commits on Nov 5, 2024

update extend.md
HaiwangYu
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Commits on Nov 15, 2024

disable dnn by default
HaiwangYu
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Commits on Nov 18, 2024

careful replacing
HaiwangYu
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Commits on Nov 19, 2024

init GeomService
HaiwangYu
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Commits on Nov 20, 2024

renaming to ClusGeomHelper
HaiwangYu
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Commits on Nov 21, 2024

add GeomHelper to PTBuilding
HaiwangYu
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Commits on Nov 23, 2024

modify the jsonnet configuration to allow run/subrun/event number to be passed
Xin Qian
committed

Commits on Nov 24, 2024

fix bug regarding returning radius from a series get_closest functions, Internally, kdtree use L2, which is distance squared, so the return needs to have a sqrt() in order to get distance instead o…
Xin Qian
committed

Commits on Nov 25, 2024

fix a bug in the graph creation
Xin Qian
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refactor separate to a free function
HaiwangYu
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fix another bug of separation
Xin Qian
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Commits on Nov 26, 2024

finish debugging separate function
Xin Qian
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init merge back solution
HaiwangYu
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validated connect1 function
Xin Qian
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Merge branch 'apply-pointcloud' of github.com:WireCell/wire-cell-toolkit into apply-pointcloud
Xin Qian
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Commits on Nov 27, 2024

valdiating deghosting alg
Xin Qian
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catch up
Xin Qian
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Commits on Nov 28, 2024

reduce randomness and fix a bug
Xin Qian
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improve alg
Xin Qian
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improve the code
Xin Qian
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adding sorting code
Xin Qian
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adding sorting code
Xin Qian
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update
Xin Qian
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revert back
Xin Qian
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update the boundary cuts
Xin Qian
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update code to refactor graph operations
Xin Qian
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catch up
Xin Qian
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Commits on Nov 29, 2024

fixed a bug in the protect overcustering
Xin Qian
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hack clustering_isolate for bee display
Xin Qian
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fix the order of sorting
Xin Qian
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Commits on Dec 5, 2024

Commits on Dec 20, 2024

Commits on Dec 23, 2024

Commits on Dec 24, 2024

fixed a bug in sorting cluster length in clustering_neutrino
Xin Qian
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fix a bug
Xin Qian
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Commits on Dec 27, 2024

Patch in use of storing CC array in pcarray to merge_clusters().
brettviren
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Commits on Jan 2, 2025

add some documentations
lastgeorge
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Commits on Jan 3, 2025