try build in CI

TARGENE · Dec 21, 2023 · 12ba044 · 12ba044
1 parent 695e661
commit 12ba044
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Showing 7 changed files with 7 additions and 33 deletions.
diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -30,7 +30,7 @@ jobs:
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
       - name: Build App
-        run: julia --project -t auto deps/build_app.jl app tarball
+        run: julia --project --startup-file=no deps/build_app.jl
       - uses: julia-actions/julia-processcoverage@v1
       - uses: codecov/codecov-action@v2
         with:

diff --git a/.gitignore b/.gitignore
@@ -12,6 +12,7 @@ deps/build.log
 deps/downloads/
 deps/usr/
 deps/src/
+tmle/
 
 # Build artifacts for creating documentation generated by the Documenter package
 docs/build/

diff --git a/Comonicon.toml b/Comonicon.toml
diff --git a/Project.toml b/Project.toml
@@ -26,13 +26,15 @@ MLJXGBoostInterface = "54119dfa-1dab-4055-a167-80440f4f7a91"
 Mmap = "a63ad114-7e13-5084-954f-fe012c677804"
 MultipleTesting = "f8716d33-7c4a-5097-896f-ce0ecbd3ef6b"
 Optim = "429524aa-4258-5aef-a3af-852621145aeb"
+PackageCompiler = "9b87118b-4619-50d2-8e1e-99f35a4d4d9d"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 Serialization = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
 TMLE = "8afdd2fb-6e73-43df-8b62-b1650cd9c8cf"
 Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
 YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
 
 [compat]
+PackageCompiler = "2.1.16"
 ArgParse = "1.1.4"
 Arrow = "2.5.2"
 CSV = "0.10"

diff --git a/deps/build_app.jl b/deps/build_app.jl
@@ -1 +1,2 @@
-using TargetedEstimation; TargetedEstimation.comonicon_install()
+using PackageCompiler
+PackageCompiler.create_app(".", "tmle", precompile_execution_file="execute.jl")
diff --git a/deps/execute.jl b/deps/execute.jl
@@ -1,13 +1,6 @@
 using TargetedEstimation
 
 @info "Running precompilation script."
-
-# Run help messages
-TargetedEstimation.command_main(["-h"])
-TargetedEstimation.command_main(["tmle", "-h"])
-TargetedEstimation.command_main(["make-summary", "-h"])
-TargetedEstimation.command_main(["sieve-variance-plateau", "-h"])
-
 # Run workload
 TEST_DIR = joinpath(pkgdir(TargetedEstimation), "test")
 push!(LOAD_PATH, TEST_DIR)

diff --git a/docker/Dockerfile b/docker/Dockerfile
@@ -22,8 +22,5 @@ RUN julia --project -e'using Pkg; Pkg.instantiate(); Pkg.resolve(); Pkg.precompi
 # Build CLI
 RUN julia --project --startup-file=no deps/build_app.jl
 
-# Add CLI to PATH
-ENV PATH="${PATH}:/opt/bin/"
-
 # Test the CLI runs
-RUN tmle tmle data/sample_dataset.csv
+RUN tmle/bin/tmle tmle data/sample_dataset.csv