[FEATURE] use gVCF with compression #15
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compress gVCF using the "-ERC GVCF" option which leads to signficant disk space reduction of the produced gVCF file. Furthermore, we only use 3 different bands instead of 4 (default). See also: http://gatkforums.broadinstitute.org/gatk/discussion/4017/what-is-a-gvcf-and-how-is-it-different-from-a-regular-vcf
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compress gVCF using the "-ERC GVCF" option which leads to signficant disk space
reduction of the produced gVCF file. Furthermore, we only use 3 different bands
instead of 4 (default). See also:
http://gatkforums.broadinstitute.org/gatk/discussion/4017/what-is-a-gvcf-and-how-is-it-different-from-a-regular-vcf