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Merge pull request #26 from Sage-Bionetworks-Workflows/cchmc
setup job to run CCHMC data
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| { | ||
| "cwl_wf_url": "https://github.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/tree/v1.1.4", | ||
| "cwl_args_url": "https://raw.githubusercontent.com/Sage-Bionetworks-Workflows/dockstore-workflow-rnaseq/v1.1.4/jobs/CCHMC_Paired_Fastq/job.json", | ||
| "index_synapseid": "syn20645801", | ||
| "synapse_parentid": "syn23334104", | ||
| "nthreads": 15, | ||
| "synapse_config": { | ||
| "class": "File", | ||
| "path": "/etc/synapse/.synapseConfig" | ||
| }, | ||
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| { | ||
| "zone": "us-east-1a", | ||
| "cluster_name": "rna-seq-reprocessing-scicomp-toil-cluster-v001", | ||
| "tmpdir": "/var/lib/toil", | ||
| "run_name": "icd", | ||
| "log_level": "DEBUG", | ||
| "retry_count": "3", | ||
| "target_time": "1", | ||
| "max_nodes": "25", | ||
| "default_disk": "450G", | ||
| "node_types": "m5.4xlarge", | ||
| "node_storage": "500", | ||
| "preemptable_compensation": "0.5", | ||
| "rescue_frequency": "9000", | ||
| "cwl": "fastq_paired.cwl" | ||
| } | ||
|
|