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Usage Example

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Raafat Abdulmajeed Fahmy edited this page Nov 29, 2023 · 1 revision 
PopAllele/pop_run.py --help
usage: pop_run.py [-h] [--QRe CSV_FILE] [--QRd QR_CODE_IMAGE]

options:
  -h, --help           show this help message and exit
  --QRe CSV_FILE       Encode QR from a Genotyping Data (CSV file)
  --QRd QR_CODE_IMAGE  Decode QR codes from a QR code image

Input Sample: The data provided is a genotypic dataset that illustrates the distribution of DArT Markers across 7 distinct germlines.

# existence  (+1) or absence (0) of an allele , (-) Missing point.
#

MarkerName	A1	A2	A3	A4	A5	A6	A8
wPt-668205	0	0	0	1	0	0	0
wPt-7147	1	0	0	0	0	-	0	
wPt-732616	1	1	0	0	0	0	0
wPt-6005	0	0	0	-	0	0	0	
wPt-734107	0	1	1	1	1	1	0	
wPt-1924	0	0	0	0	0	0	0	
wPt-669484	0	0	0	0	0	0	0	
wPt-666537	0	-	0	0	1	0	0

Running PopAllele

  • Encoding Genotypic Data
pop_run.py --QRe CSV_FILE

Output:

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