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ubuntu fix
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Pombert-JF committed Mar 6, 2024
1 parent 5a1939a commit 291751c
Showing 1 changed file with 7 additions and 7 deletions.
14 changes: 7 additions & 7 deletions get_homology.pl
Original file line number Diff line number Diff line change
@@ -1,16 +1,16 @@
#!/usr/bin/perl
#!/usr/bin/env perl
## Pombert Lab, 2022

my $name = "get_homology.pl";
my $version = "0.1.6b";
my $updated = "2024-03-06";

use warnings;
use strict;
use Getopt::Long qw(GetOptions);
use File::Basename;
use File::Path qw(make_path);

my $name = "get_homology.pl";
my $version = "0.1.6a";
my $updated = "2023-10-19";

my $usage = << "EXIT";
NAME ${name}
VERSION ${version}
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system ("
diamond makedb \\
--in $file \\
--db $db_dir/$file_prefix &> /dev/null
--db $db_dir/$file_prefix 1> /dev/null
");
}
$db_files{$file_prefix} = "$db_dir/$file_prefix";
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-o $blast_file \\
-e $e_value \\
-k 1 \\
-f 6 &> /dev/null
-f 6 1> /dev/null
")
}

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