multiqc: Add support for --sample-names

PavlidisLab · Jun 7, 2024 · da0d5e4 · da0d5e4
1 parent ba9f9d0
commit da0d5e4
Showing 1 changed file with 4 additions and 0 deletions.
diff --git a/bioluigi/tasks/multiqc.py b/bioluigi/tasks/multiqc.py
@@ -14,13 +14,17 @@ class GenerateReport(ScheduledExternalProgramTask):
     input_dirs = luigi.ListParameter()
     output_dir = luigi.Parameter()
 
+    sample_names = luigi.OptionalParameter(default=None, positional=False)
+
     title = luigi.OptionalParameter(default=None, positional=False)
     comment = luigi.OptionalParameter(default=None, positional=False)
 
     force = luigi.BoolParameter(default=False, positional=False)
 
     def program_args(self):
         args = [cfg.multiqc_bin, '--outdir', self.output_dir]
+        if self.sample_names:
+            args.extend(['--sample-names', self.sample_names])
         if self.title is not None:
             args.extend(['--title', self.title])
         if self.comment is not None: