Merge branch 'dev' into release-3.0.0

CHANGELOG.md

@@ -45,6 +45,7 @@
 
 ### Documentation and tutorial enhancements
 - Updated `SpikeEventSeries`, `DecompositionSeries`, and `FilteredEphys` examples. @stephprince [#2012](https://github.com/NeurodataWithoutBorders/pynwb/pull/2012)
+- Replaced deprecated `scipy.misc.face` dataset in the images tutorial with another example. @stephprince [#2016](https://github.com/NeurodataWithoutBorders/pynwb/pull/2016)
 
 
 ## PyNWB 2.8.3 (November 19, 2024)

docs/gallery/domain/images.py

@@ -296,30 +296,14 @@
 # :py:class:`~pynwb.image.IndexSeries` that indexes into the
 # :py:class:`~pynwb.base.Images`.
 
-from scipy import datasets
-
 from pynwb.base import ImageReferences
 from pynwb.image import GrayscaleImage, Images, IndexSeries, RGBImage
 
-gs_face = GrayscaleImage(
-    name="gs_face",
-    data=datasets.face(gray=True),
-    description="Grayscale version of a raccoon.",
-    resolution=35.433071,
-)
-
-rgb_face = RGBImage(
-    name="rgb_face",
-    data=datasets.face(),
-    resolution=70.0,
-    description="RGB version of a raccoon.",
-)
-
 images = Images(
     name="raccoons",
-    images=[rgb_face, gs_face],
+    images=[rgb_logo, gs_logo],
     description="A collection of raccoons.",
-    order_of_images=ImageReferences("order_of_images", [rgb_face, gs_face]),
+    order_of_images=ImageReferences("order_of_images", [rgb_logo, gs_logo]),
 )
 
 idx_series = IndexSeries(

docs/source/conf.py

@@ -147,7 +147,7 @@ def __call__(self, filename):
     'fsspec': ("https://filesystem-spec.readthedocs.io/en/latest/", None),
     'nwbwidgets': ("https://nwb-widgets.readthedocs.io/en/latest/", None),
     'nwb-overview': ("https://nwb-overview.readthedocs.io/en/latest/", None),
-    'zarr': ("https://zarr.readthedocs.io/en/stable/", None),
+    'zarr': ("https://zarr.readthedocs.io/en/v2.18.4/", None),  # TODO - update when hdmf-zarr supports Zarr 3.0
     'hdmf-zarr': ("https://hdmf-zarr.readthedocs.io/en/stable/", None),
     'numcodecs': ("https://numcodecs.readthedocs.io/en/latest/", None),
 }